Factsheet for Zm00001d025556_P001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d025565_P001	Maize	golgi	75.95	85.31
Zm00001d025561_P002	Maize	golgi	74.68	83.1
EES18790	Sorghum	endoplasmic reticulum, extracellular, golgi	56.12	59.91
Zm00001d026467_P001	Maize	cytosol	38.82	55.76
Os06t0212900-01	Rice	endoplasmic reticulum	49.58	50.0
Zm00001d007706_P001	Maize	cytosol	18.35	25.66
Zm00001d025053_P001	Maize	cytosol	9.07	17.99
Zm00001d048458_P006	Maize	cytosol	8.86	17.57
Zm00001d048073_P001	Maize	cytosol	16.46	13.49
Zm00001d036571_P002	Maize	cytosol	18.78	11.82
Zm00001d014358_P014	Maize	cytosol	18.35	11.58
Zm00001d037717_P002	Maize	plastid	18.35	10.32
Zm00001d009950_P002	Maize	cytosol	18.57	10.24
Zm00001d009948_P004	Maize	cytosol	17.93	10.2
Zm00001d037700_P002	Maize	cytosol	17.93	10.11
Zm00001d051607_P004	Maize	endoplasmic reticulum	17.09	9.01
Zm00001d017809_P002	Maize	plasma membrane	17.09	8.74
Zm00001d009828_P001	Maize	cytosol	0.42	1.57
Zm00001d051609_P004	Maize	cytosol	1.27	1.28

Protein Annotations

EntrezGene:103641707	Gene3D:3.30.420.40	Gene3D:3.90.640.10	MapMan:35.1	UniProt:A0A1D6J7R7	ProteinID:AQK43967.1
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:Hsp_70_fam
PFAM:PF00012	PRINTS:PR00301	PANTHER:PTHR19375	PANTHER:PTHR19375:SF201	SUPFAM:SSF53067	SignalP:SignalP-noTM
TMHMM:TMhelix	UniParc:UPI0004DEA957	EnsemblPlantsGene:Zm00001d025556	EnsemblPlants:Zm00001d025556_P001	EnsemblPlants:Zm00001d025556_T001	SEG:seg

Description

Luminal-binding protein 2

Coordinates

chr10:-:122310872..122312695

Molecular Weight (calculated)

52901.5 Da

IEP (calculated)

7.393

GRAVY (calculated)

-0.264

Length

474 amino acids

Sequence
(BLAST)

001: MMGRRLLVSL LPLLMVVMVT AAAFDISRAP PAFGVRRGAP KEYFEWRRPW GTAPFLLGSA AAIHLGNTSS CIAAYDFGPG SHEYYQLCMP SWVAVTDNDM
101: VLSGEAAMNH ATVSPGTAIS GFTRLLDQRL KDDVVKSEMK LSPLYKFSER EGRVAIQFNH PSRRGQVIEF SPLDLTVVLV SELKHMAEAH LGRELSAAVI
201: AVPRHLNYNG RQDVVNVGRY DAGFRRAAKA IDRQITLYHH HTEQGDGKAI LVLRVGGRTS DATIFKFIDG EARYVTAQDD IYLGGDDFTT RIVDYMAELI
301: KEKNQWDIRQ DAEALRRLRV ACEHAKKALS DQEETMVQIH VADIESSAPL TRAKLEELNQ DLLDRVMGLV DGAVMGTGSG WLPRPRDESR TDMVDEIVLV
401: GGSARMPKLR QLIEDYFRGR RPNSRKGVEP EDAIVQGTAI LSRPKAARYL EECFDYLYGK DGRGLPSFVF RTSN

Best Arabidopsis Sequence Match ( AT1G09080.2 )
(BLAST)

001: MIFIKENTAK MTRNKAIACL VFLTALMSSL AIEGEEQKLG TVIGIDLGTT YSCVGVYHNK HVEIIANDQG NRITPSWVAF TDTERLIGEA AKNQAAKNPE
101: RTIFDPKRLI GRKFDDPDVQ RDIKFLPYKV VNKDGKPYIQ VKVKGEEKLF SPEEISAMIL TKMKETAEAF LGKKIKDAVI TVPAYFNDAQ RQATKDAGAI
201: AGLNVVRIIN EPTGAAIAYG LDKKGGESNI LVYDLGGGTF DVSILTIDNG VFEVLSTSGD THLGGEDFDH RVMDYFIKLV KKKYNKDISK DHKALGKLRR
301: ECELAKRSLS NQHQVRVEIE SLFDGVDFSE PLTRARFEEL NMDLFKKTME PVKKALKDAG LKKSDIDEIV LVGGSTRIPK VQQMLKDFFD GKEPSKGTNP
401: DEAVAYGAAV QGGVLSGEGG EETQNILLLD VAPLSLGIET VGGVMTNIIP RNTVIPTKKS QVFTTYQDQQ TTVTINVYEG ERSMTKDNRE LGKFDLTGIL
501: PAPRGVPQIE VTFEVDANGI LQVKAEDKVA KTSQSITITN DKGRLTEEEI EEMIREAEEF AEEDKIMKEK IDARNKLETY VYNMKSTVAD KEKLAKKISD
601: EDKEKMEGVL KEALEWLEEN VNAEKEDYDE KLKEVELVCD PVIKSVYEKT EGENEDDDGD DHDEL

Arabidopsis Description

MED37BProbable mediator of RNA polymerase II transcription subunit 37b [Source:UniProtKB/Swiss-Prot;Acc:Q8H1B3]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.