Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 5
- golgi 6
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d025556_P001 | Maize | endoplasmic reticulum, golgi | 59.91 | 56.12 |
| Zm00001d025561_P002 | Maize | golgi | 51.58 | 53.76 |
| Os06t0212900-01 | Rice | endoplasmic reticulum | 56.76 | 53.62 |
| Zm00001d025565_P001 | Maize | golgi | 50.23 | 52.84 |
| Zm00001d026467_P001 | Maize | cytosol | 31.76 | 42.73 |
| EES16657 | Sorghum | endoplasmic reticulum, golgi | 37.84 | 38.36 |
| EER97842 | Sorghum | endoplasmic reticulum, golgi | 34.91 | 35.63 |
| OQU92817 | Sorghum | cytosol | 18.92 | 28.09 |
| EER92633 | Sorghum | plastid | 17.34 | 12.05 |
| OQU76890 | Sorghum | cytosol | 17.79 | 10.08 |
| KXG30896 | Sorghum | endoplasmic reticulum | 19.82 | 9.48 |
| EES19148 | Sorghum | cytosol | 17.34 | 9.05 |
| EES17815 | Sorghum | cytosol | 17.12 | 9.03 |
Protein Annotations
| EnsemblPlants:EES18790 | EnsemblPlantsGene:SORBI_3009G254800 | Gene3D:3.30.30.30 | Gene3D:3.30.420.40 | Gene3D:3.90.640.10 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | InterPro:Hsp_70_fam | PANTHER:PTHR19375 | PANTHER:PTHR19375:SF201 |
| PFAM:PF00012 | PRINTS:PR00301 | ProteinID:EES18790 | ProteinID:EES18790.2 | SEG:seg | SignalP:SignalP-noTM |
| SUPFAM:SSF53067 | TMHMM:TMhelix | UniParc:UPI00081AC1D4 | UniProt:C5YWX4 | MapMan:35.1 | : |
Description
hypothetical protein
Coordinates
chr9:+:58879456..58881262
Molecular Weight (calculated)
48036.3 Da
IEP (calculated)
6.347
GRAVY (calculated)
-0.078
Length
444 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAGRLLVIL VLLMAGAAAA AAFGIPMPVP AFGVQDVPWE YCALYRNIHG SAPFDLGTAA AIHLGNTNSC IAGYDVDPAT GAGGNYYQLC IPSWVAVTEN
101: GTLAGEAAMN HAAVSPGTAI SGFMRFMERR LEQREVTRAM ELVPYKFVEW LGWAGIQVQV QADQQVKVFS VAHLAGVLIA ELKHKAEAHL GRDIRHGVIA
201: VPHHLTYRGR QDVVHTASSW GGFWGGGVKA IDQQIAAAAA YGHHTETEQG DGKTILVFRV GGRTSDATIF KFVNGTARYD YSQHDYFLGG DDLTARIVDY
301: MAELIKQRHQ WDIRQDEDGK ALGSLRVACE YAKKALSDQE ETLVQVDLDG IGAGAGSFSE LLTRAKLEEL NQDLLDRAMA LVDGALTRSG RRQPDMVVVD
401: EIVLAGGSAR IPKLRQLVQD YMGGREPNSR KGVEAQEAII HGRS
101: GTLAGEAAMN HAAVSPGTAI SGFMRFMERR LEQREVTRAM ELVPYKFVEW LGWAGIQVQV QADQQVKVFS VAHLAGVLIA ELKHKAEAHL GRDIRHGVIA
201: VPHHLTYRGR QDVVHTASSW GGFWGGGVKA IDQQIAAAAA YGHHTETEQG DGKTILVFRV GGRTSDATIF KFVNGTARYD YSQHDYFLGG DDLTARIVDY
301: MAELIKQRHQ WDIRQDEDGK ALGSLRVACE YAKKALSDQE ETLVQVDLDG IGAGAGSFSE LLTRAKLEEL NQDLLDRAMA LVDGALTRSG RRQPDMVVVD
401: EIVLAGGSAR IPKLRQLVQD YMGGREPNSR KGVEAQEAII HGRS
001: MIFIKENTAK MTRNKAIACL VFLTALMSSL AIEGEEQKLG TVIGIDLGTT YSCVGVYHNK HVEIIANDQG NRITPSWVAF TDTERLIGEA AKNQAAKNPE
101: RTIFDPKRLI GRKFDDPDVQ RDIKFLPYKV VNKDGKPYIQ VKVKGEEKLF SPEEISAMIL TKMKETAEAF LGKKIKDAVI TVPAYFNDAQ RQATKDAGAI
201: AGLNVVRIIN EPTGAAIAYG LDKKGGESNI LVYDLGGGTF DVSILTIDNG VFEVLSTSGD THLGGEDFDH RVMDYFIKLV KKKYNKDISK DHKALGKLRR
301: ECELAKRSLS NQHQVRVEIE SLFDGVDFSE PLTRARFEEL NMDLFKKTME PVKKALKDAG LKKSDIDEIV LVGGSTRIPK VQQMLKDFFD GKEPSKGTNP
401: DEAVAYGAAV QGGVLSGEGG EETQNILLLD VAPLSLGIET VGGVMTNIIP RNTVIPTKKS QVFTTYQDQQ TTVTINVYEG ERSMTKDNRE LGKFDLTGIL
501: PAPRGVPQIE VTFEVDANGI LQVKAEDKVA KTSQSITITN DKGRLTEEEI EEMIREAEEF AEEDKIMKEK IDARNKLETY VYNMKSTVAD KEKLAKKISD
601: EDKEKMEGVL KEALEWLEEN VNAEKEDYDE KLKEVELVCD PVIKSVYEKT EGENEDDDGD DHDEL
101: RTIFDPKRLI GRKFDDPDVQ RDIKFLPYKV VNKDGKPYIQ VKVKGEEKLF SPEEISAMIL TKMKETAEAF LGKKIKDAVI TVPAYFNDAQ RQATKDAGAI
201: AGLNVVRIIN EPTGAAIAYG LDKKGGESNI LVYDLGGGTF DVSILTIDNG VFEVLSTSGD THLGGEDFDH RVMDYFIKLV KKKYNKDISK DHKALGKLRR
301: ECELAKRSLS NQHQVRVEIE SLFDGVDFSE PLTRARFEEL NMDLFKKTME PVKKALKDAG LKKSDIDEIV LVGGSTRIPK VQQMLKDFFD GKEPSKGTNP
401: DEAVAYGAAV QGGVLSGEGG EETQNILLLD VAPLSLGIET VGGVMTNIIP RNTVIPTKKS QVFTTYQDQQ TTVTINVYEG ERSMTKDNRE LGKFDLTGIL
501: PAPRGVPQIE VTFEVDANGI LQVKAEDKVA KTSQSITITN DKGRLTEEEI EEMIREAEEF AEEDKIMKEK IDARNKLETY VYNMKSTVAD KEKLAKKISD
601: EDKEKMEGVL KEALEWLEEN VNAEKEDYDE KLKEVELVCD PVIKSVYEKT EGENEDDDGD DHDEL
Arabidopsis Description
MED37BProbable mediator of RNA polymerase II transcription subunit 37b [Source:UniProtKB/Swiss-Prot;Acc:Q8H1B3]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.