CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

extracellular 5
endoplasmic reticulum 7
vacuole 5
plasma membrane 5
golgi 6
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
EpiLoc:	endoplasmic reticulum
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	mitochondrion
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES16657	Sorghum	endoplasmic reticulum, golgi	46.21	45.89
EES18790	Sorghum	endoplasmic reticulum, extracellular, golgi	35.63	34.91
OQU92817	Sorghum	cytosol	22.76	33.11
EER92633	Sorghum	plastid	23.45	15.96
OQU76890	Sorghum	cytosol	25.29	14.03
EES17815	Sorghum	cytosol	24.6	12.71
EES19148	Sorghum	cytosol	24.83	12.69
KXG30896	Sorghum	endoplasmic reticulum	24.37	11.42

Protein Annotations

Gene3D:3.30.420.40	Gene3D:3.90.640.10	MapMan:35.1	EntrezGene:8081606	UniProt:C5X787	EnsemblPlants:EER97842
ProteinID:EER97842	ProteinID:EER97842.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
InterPro:Heat_shock_70_CS	InterPro:Hsp_70_fam	PFAM:PF00012	PRINTS:PR00301	ScanProsite:PS01036	PANTHER:PTHR19375
PANTHER:PTHR19375:SF201	EnsemblPlantsGene:SORBI_3002G008000	SUPFAM:SSF53067	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0001A83653
RefSeq:XP_002461321.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:746212..747519

Molecular Weight (calculated)

47060.9 Da

IEP (calculated)

5.430

GRAVY (calculated)

-0.037

Length

435 amino acids

Sequence
(BLAST)

001: MSPSFVVARV FVCLVAFVAA LGKASALPDH HWHWPPDPAG RVVAIDLGNT NSCVAGYDSG DTTRTMFHHC IPSWVAFPDD DDGAVLVGED AMNHAAVVNP
101: GAAVSGFKRL LGKRFTRVFE REFAQSVKEN LPYKVFEENA QVQVEVKTTK EDGGVRNVGV EQLTAAVLAK LKETAEAHLG HRVEAAVLTL PLAFSDYASR
201: SAAVFAGRLA GLKAVSAVLS EPVAAAMAYG LSKSLRDEGN VVVLHVGGGT TEASVMTFVD GVYEALSSQY DPFFGGQDLD RRIVDHFVRQ IRDKHGRDIA
301: DDSAALEKLR TACERAKKTL SHQDHAQVTV ESLVDGVDLS EPLTRAEFEE LNHDLFLKVV EMVDRVVSQA QVDTIDEVLL VGGSTMIPKV QELIRDYFGG
401: TTKTVLHTRL KPDEVVTIGA AEYSKRPDAL CSSSC

Best Arabidopsis Sequence Match ( AT1G09080.2 )
(BLAST)

001: MIFIKENTAK MTRNKAIACL VFLTALMSSL AIEGEEQKLG TVIGIDLGTT YSCVGVYHNK HVEIIANDQG NRITPSWVAF TDTERLIGEA AKNQAAKNPE
101: RTIFDPKRLI GRKFDDPDVQ RDIKFLPYKV VNKDGKPYIQ VKVKGEEKLF SPEEISAMIL TKMKETAEAF LGKKIKDAVI TVPAYFNDAQ RQATKDAGAI
201: AGLNVVRIIN EPTGAAIAYG LDKKGGESNI LVYDLGGGTF DVSILTIDNG VFEVLSTSGD THLGGEDFDH RVMDYFIKLV KKKYNKDISK DHKALGKLRR
301: ECELAKRSLS NQHQVRVEIE SLFDGVDFSE PLTRARFEEL NMDLFKKTME PVKKALKDAG LKKSDIDEIV LVGGSTRIPK VQQMLKDFFD GKEPSKGTNP
401: DEAVAYGAAV QGGVLSGEGG EETQNILLLD VAPLSLGIET VGGVMTNIIP RNTVIPTKKS QVFTTYQDQQ TTVTINVYEG ERSMTKDNRE LGKFDLTGIL
501: PAPRGVPQIE VTFEVDANGI LQVKAEDKVA KTSQSITITN DKGRLTEEEI EEMIREAEEF AEEDKIMKEK IDARNKLETY VYNMKSTVAD KEKLAKKISD
601: EDKEKMEGVL KEALEWLEEN VNAEKEDYDE KLKEVELVCD PVIKSVYEKT EGENEDDDGD DHDEL

Arabidopsis Description

MED37BProbable mediator of RNA polymerase II transcription subunit 37b [Source:UniProtKB/Swiss-Prot;Acc:Q8H1B3]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.