Factsheet for Zm00001d029394_P003

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
nucleus 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009656	Potato	nucleus, plastid	100.0	100.0
Zm00001d045475_P001	Maize	nucleus, plastid	100.0	100.0
Zm00001d036036_P001	Maize	plastid	100.0	100.0
Zm00001d016908_P006	Maize	nucleus, plastid	100.0	100.0
CDY39044	Canola	nucleus, plastid	100.0	100.0
TraesCS7B01G063000.1	Wheat	plastid	100.0	100.0
TraesCS7D01G432000.1	Wheat	nucleus, plastid	100.0	100.0
PGSC0003DMT400043254	Potato	nucleus, plastid	100.0	100.0
TraesCS4A01G421500.1	Wheat	nucleus, plastid	100.0	100.0
Zm00001d003493_P001	Maize	nucleus, plastid	99.26	99.26
Zm00001d041823_P003	Maize	mitochondrion, vacuole	28.68	7.98
Zm00001d039702_P001	Maize	plastid	25.74	7.43
Zm00001d048323_P001	Maize	endoplasmic reticulum, golgi, vacuole	25.0	7.42
Zm00001d017906_P003	Maize	plastid	26.47	7.16
Zm00001d045763_P002	Maize	golgi, plastid	25.74	7.01
Zm00001d029008_P001	Maize	mitochondrion	25.74	7.01
Zm00001d037367_P001	Maize	plastid	25.74	7.0
Zm00001d008692_P001	Maize	mitochondrion	25.74	6.99
Zm00001d037199_P001	Maize	mitochondrion	26.47	6.73
Zm00001d027842_P003	Maize	endoplasmic reticulum, golgi, plasma membrane	25.0	6.26
Zm00001d012362_P001	Maize	plastid	25.0	6.24
Zm00001d002742_P002	Maize	endoplasmic reticulum, peroxisome, plasma membrane, plastid	21.32	5.79
Zm00001d010112_P001	Maize	cytosol, plastid	22.79	5.36
Zm00001d050483_P002	Maize	golgi	22.06	5.18
Zm00001d002668_P004	Maize	golgi	22.06	5.15
Zm00001d038263_P001	Maize	plastid	21.32	5.06
Zm00001d021448_P002	Maize	mitochondrion	18.38	4.21
Zm00001d020643_P002	Maize	plasma membrane, plastid	19.12	3.38

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100192746	EntrezGene:100194139	EntrezGene:103627323	EntrezGene:103638137	MapMan:12.1.4
ProteinID:AQK71917.1	ProteinID:AQK71918.1	ProteinID:AQK71919.1	ProteinID:AQK71920.1	ProteinID:AQK71921.1	ProteinID:AQK71922.1
ProteinID:AQK80197.1	ProteinID:AQL02337.1	UniProt:B4FCH2	EMBL:BT034810	EMBL:BT042286	EMBL:BT043468
EMBL:BT087344	EMBL:EU952417	EMBL:EU952814	EMBL:EU952884	EMBL:EU953487	EMBL:EU958923
EMBL:EU958930	EMBL:EU974018	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005694	GO:GO:0005730	GO:GO:0030875	GO:GO:0046982	InterPro:Histone-fold	InterPro:Histone_H2A/H2B/H3
InterPro:Histone_H3/CENP-A	InterPro:IPR009072	ProteinID:ONL98646.1	ProteinID:ONL98647.1	ProteinID:ONL98649.1	PFAM:PF00125
PRINTS:PR00622	ScanProsite:PS00322	ScanProsite:PS00959	PANTHER:PTHR11426	PANTHER:PTHR11426:SF163	SMART:SM00428
SUPFAM:SSF47113	UniParc:UPI0000000067	EnsemblPlantsGene:Zm00001d029394	EnsemblPlants:Zm00001d029394_P003	EnsemblPlants:Zm00001d029394_T003	:

Description

uaz248a(his3)Histone H3

Coordinates

chr1:+:68806092..68808399

Molecular Weight (calculated)

15407.0 Da

IEP (calculated)

11.739

GRAVY (calculated)

-0.602

Length

136 amino acids

Sequence
(BLAST)

001: MARTKQTARK STGGKAPRKQ LATKAARKSA PTTGGVKKPH RYRPGTVALR EIRKYQKSTE LLIRKLPFQR LVREIAQDFK TDLRFQSHAV LALQEAAEAY
101: LVGLFEDTNL CAIHAKRVTI MPKDIQLARR IRGERA

Best Arabidopsis Sequence Match ( AT4G40040.1 )
(BLAST)

001: MARTKQTARK STGGKAPRKQ LATKAARKSA PTTGGVKKPH RYRPGTVALR EIRKYQKSTE LLIRKLPFQR LVREIAQDFK TDLRFQSHAV LALQEAAEAY
101: LVGLFEDTNL CAIHAKRVTI MPKDIQLARR IRGERA

Arabidopsis Description

HTR8Histone H3.3 [Source:UniProtKB/Swiss-Prot;Acc:P59169]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.