Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d000176_P001 | Maize | nucleus | 56.18 | 64.9 |
| Os10t0560400-01 | Rice | cytosol, nucleus, plastid | 58.3 | 55.56 |
| GSMUA_Achr5P15400_001 | Banana | nucleus | 31.1 | 50.87 |
| TraesCS1B01G233600.1 | Wheat | nucleus | 51.94 | 50.87 |
| TraesCS1D01G221800.1 | Wheat | nucleus | 51.94 | 50.87 |
| TraesCS1A01G220300.1 | Wheat | nucleus | 51.94 | 50.52 |
| GSMUA_Achr5P13470_001 | Banana | nucleus | 28.27 | 43.48 |
| Zm00001d024909_P001 | Maize | cytosol, extracellular, nucleus | 32.51 | 38.33 |
| GSMUA_Achr4P30370_001 | Banana | nucleus | 36.75 | 36.49 |
| HORVU1Hr1G056120.3 | Barley | cytosol | 31.45 | 30.07 |
Protein Annotations
| EnsemblPlants:Zm00001d029885_P001 | EnsemblPlants:Zm00001d029885_T001 | EnsemblPlantsGene:Zm00001d029885 | EntrezGene:103637642 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:CCT_domain |
| InterPro:IPR010402 | PANTHER:PTHR31319 | PANTHER:PTHR31319:SF9 | PFAM:PF06203 | PFscan:PS51017 | ProteinID:ONL99769.1 |
| SEG:seg | UniParc:UPI0004DECB71 | UniProt:A0A1D6K8A4 | MapMan:35.1 | : | : |
Description
GRMZM2G154580Zinc finger protein CONSTANS-LIKE 5
Coordinates
chr1:+:92217234..92219505
Molecular Weight (calculated)
29266.1 Da
IEP (calculated)
7.040
GRAVY (calculated)
-0.393
Length
283 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAASSATCR VCGGAGECAC RHGHGIGGAR CGGVVAVADL NRGFPALWHQ PEEEPSGAGA APGLHEFQFF GHDEDHDSVT WLFTDPSPHL HRGPAAAEVG
101: NGVAEAEQRR PPPVFDGGYA HAQYGELPGH GLTFDVPLSG RRGGEVASVA PVLEAGLGLG GGGGGDLATS SSATIMSFCG TTFTDAASAV PGDAAAAAPN
201: GSASGAADPA VDREAKVMRY KEKRKRRRYE KQIRYASRKA YAEMRPRVKG RFAKVPDGEA PSPPAPAAAC YEPGRLDLGW FRS
101: NGVAEAEQRR PPPVFDGGYA HAQYGELPGH GLTFDVPLSG RRGGEVASVA PVLEAGLGLG GGGGGDLATS SSATIMSFCG TTFTDAASAV PGDAAAAAPN
201: GSASGAADPA VDREAKVMRY KEKRKRRRYE KQIRYASRKA YAEMRPRVKG RFAKVPDGEA PSPPAPAAAC YEPGRLDLGW FRS
001: MASSSRLCDS CKSTAATLFC RADAAFLCGD CDGKIHTANK LASRHERVWL CEVCEQAPAH VTCKADAAAL CVTCDRDIHS ANPLSRRHER VPITPFYDAV
101: GPAKSASSSV NFVDEDGGDV TASWLLAKEG IEITNLFSDL DYPKIEVTSE ENSSGNDGVV PVQNKLFLNE DYFNFDLSAS KISQQGFNFI NQTVSTRTID
201: VPLVPESGGV TAEMTNTETP AVQLSPAERE ARVLRYREKR KNRKFEKTIR YASRKAYAEM RPRIKGRFAK RTDSRENDGG DVGVYGGFGV VPSF
101: GPAKSASSSV NFVDEDGGDV TASWLLAKEG IEITNLFSDL DYPKIEVTSE ENSSGNDGVV PVQNKLFLNE DYFNFDLSAS KISQQGFNFI NQTVSTRTID
201: VPLVPESGGV TAEMTNTETP AVQLSPAERE ARVLRYREKR KNRKFEKTIR YASRKAYAEM RPRIKGRFAK RTDSRENDGG DVGVYGGFGV VPSF
Arabidopsis Description
COL3Zinc finger protein CONSTANS-LIKE 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK53]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.