Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G233600.1 | Wheat | nucleus | 97.58 | 97.58 |
| TraesCS1A01G220300.1 | Wheat | nucleus | 96.54 | 95.88 |
| Os10t0560400-01 | Rice | cytosol, nucleus, plastid | 59.17 | 57.58 |
| Zm00001d000176_P001 | Maize | nucleus | 48.44 | 57.14 |
| HORVU1Hr1G056120.3 | Barley | cytosol | 54.33 | 53.04 |
| Zm00001d029885_P001 | Maize | cytosol, nucleus, plastid | 50.87 | 51.94 |
| GSMUA_Achr5P15400_001 | Banana | nucleus | 28.37 | 47.4 |
| GSMUA_Achr5P13470_001 | Banana | nucleus | 24.57 | 38.59 |
| TraesCS4D01G364400.1 | Wheat | nucleus | 28.03 | 38.21 |
| OQU92139 | Sorghum | nucleus | 56.4 | 36.71 |
| TraesCS4D01G364500.1 | Wheat | mitochondrion, nucleus | 25.61 | 34.91 |
| GSMUA_Achr4P30370_001 | Banana | nucleus | 33.22 | 33.68 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G221800.1 | EnsemblPlantsGene:TraesCS1D01G221800 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:CCT_domain |
| InterPro:IPR010402 | PANTHER:PTHR31319 | PANTHER:PTHR31319:SF9 | PFAM:PF06203 | PFscan:PS51017 | SEG:seg |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1D:+:309584165..309586024
Molecular Weight (calculated)
30568.9 Da
IEP (calculated)
6.904
GRAVY (calculated)
-0.427
Length
289 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAASGAACR VCGGGAEDCS CLLQRGRGAA GVRCGVADLN RGFPGMFGQA AEEPAVDVVA GGGGAAAVGL QEFQFFGQED HESVAWLFND HAPLGGEDRL
101: QHRPATTEQL QRRQAFDAYA EYQPGHGLTF DVPVPLSRDV VDTAILGLGG GNPVTSGATI MPYCGREMLT FTEAAASSVD RNDDTAAGLA NGGAYSAGPS
201: GVVVGDVPAP TELREAKLMR YKEKRKRRRY EKQIRYASRK AYAEMRPRVK GRFAKVPDGS EGAAPSPPQQ PTQAAGYEPG RLDLGWFRS
101: QHRPATTEQL QRRQAFDAYA EYQPGHGLTF DVPVPLSRDV VDTAILGLGG GNPVTSGATI MPYCGREMLT FTEAAASSVD RNDDTAAGLA NGGAYSAGPS
201: GVVVGDVPAP TELREAKLMR YKEKRKRRRY EKQIRYASRK AYAEMRPRVK GRFAKVPDGS EGAAPSPPQQ PTQAAGYEPG RLDLGWFRS
001: MASKLCDSCK SATAALYCRP DAAFLCLSCD SKVHAANKLA SRHARVWMCE VCEQAPAHVT CKADAAALCV TCDRDIHSAN PLARRHERVP VTPFYDSVSS
101: DGSVKHTAVN FLDDCYFSDI DGNGSREEEE EEAASWLLLP NPKTTTTATA GIVAVTSAEE VPGDSPEMNT GQQYLFSDPD PYLDLDYGNV DPKVESLEQN
201: SSGTDGVVPV ENRTVRIPTV NENCFEMDFT GGSKGFTYGG GYNCISHSVS SSSMEVGVVP DGGSVADVSY PYGGPATSGA DPGTQRAVPL TSAEREARVM
301: RYREKRKNRK FEKTIRYASR KAYAEMRPRI KGRFAKRTDT NESNDVVGHG GIFSGFGLVP TF
101: DGSVKHTAVN FLDDCYFSDI DGNGSREEEE EEAASWLLLP NPKTTTTATA GIVAVTSAEE VPGDSPEMNT GQQYLFSDPD PYLDLDYGNV DPKVESLEQN
201: SSGTDGVVPV ENRTVRIPTV NENCFEMDFT GGSKGFTYGG GYNCISHSVS SSSMEVGVVP DGGSVADVSY PYGGPATSGA DPGTQRAVPL TSAEREARVM
301: RYREKRKNRK FEKTIRYASR KAYAEMRPRI KGRFAKRTDT NESNDVVGHG GIFSGFGLVP TF
Arabidopsis Description
COL4Zinc finger protein CONSTANS-LIKE 4 [Source:UniProtKB/Swiss-Prot;Acc:Q940T9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.