Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G372700.1 | Wheat | mitochondrion, nucleus | 95.28 | 94.84 |
| TraesCS5A01G541300.1 | Wheat | nucleus | 86.79 | 89.32 |
| TraesCS4D01G364400.1 | Wheat | nucleus | 78.3 | 78.3 |
| GSMUA_Achr5P15400_001 | Banana | nucleus | 24.53 | 30.06 |
| GSMUA_Achr5P13470_001 | Banana | nucleus | 25.0 | 28.8 |
| Os07t0261200-01 | Rice | nucleus | 33.96 | 28.02 |
| Zm00001d024909_P001 | Maize | cytosol, extracellular, nucleus | 29.72 | 26.25 |
| OQU81054 | Sorghum | cytosol, extracellular, nucleus | 30.19 | 26.12 |
| TraesCS1D01G221800.1 | Wheat | nucleus | 34.91 | 25.61 |
| GSMUA_Achr4P30370_001 | Banana | nucleus | 30.19 | 22.46 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G364500.1 | EnsemblPlantsGene:TraesCS4D01G364500 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:CCT_domain |
| InterPro:IPR010402 | PANTHER:PTHR31319 | PANTHER:PTHR31319:SF9 | PFAM:PF06203 | PFscan:PS51017 | SEG:seg |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4D:-:509338928..509340956
Molecular Weight (calculated)
24047.7 Da
IEP (calculated)
10.396
GRAVY (calculated)
-0.701
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MSMSCGLCGA NNCPRLMVSP IHHHHHQEHQ LREHQFFAQG NHHHHHHGAA ADHPVPLPPA NFDHRRTWAT PFHETAAAGN SISRLTLEVG AGGRHMAHLV
101: QPPARAHIVP FYGGAFTNTI SNEAIMTIDT KMMVGPAHYP TMQERAAKVM RYREKRKRRR YDKQIRYESR KAYAELQPRV NGRFVKVPEA MASPSSPASP
201: YDPSKLHLGW FQ
101: QPPARAHIVP FYGGAFTNTI SNEAIMTIDT KMMVGPAHYP TMQERAAKVM RYREKRKRRR YDKQIRYESR KAYAELQPRV NGRFVKVPEA MASPSSPASP
201: YDPSKLHLGW FQ
001: MGFGLESIKS ISGGWGAAAR SCDACKSVTA AVFCRVDSAF LCIACDTRIH SFTRHERVWV CEVCEQAPAA VTCKADAAAL CVSCDADIHS ANPLASRHER
101: VPVETFFDSA ETAVAKISAS STFGILGSST TVDLTAVPVM ADDLGLCPWL LPNDFNEPAK IEIGTENMKG SSDFMFSDFD RLIDFEFPNS FNHHQNNAGG
201: DSLVPVQTKT EPLPLTNNDH CFDIDFCRSK LSAFTYPSQS VSHSVSTSSI EYGVVPDGNT NNSVNRSTIT SSTTGGDHQA SSMDREARVL RYREKRKNRK
301: FEKTIRYASR KAYAESRPRI KGRFAKRTET ENDDIFLSHV YASAAHAQYG VVPTF
101: VPVETFFDSA ETAVAKISAS STFGILGSST TVDLTAVPVM ADDLGLCPWL LPNDFNEPAK IEIGTENMKG SSDFMFSDFD RLIDFEFPNS FNHHQNNAGG
201: DSLVPVQTKT EPLPLTNNDH CFDIDFCRSK LSAFTYPSQS VSHSVSTSSI EYGVVPDGNT NNSVNRSTIT SSTTGGDHQA SSMDREARVL RYREKRKNRK
301: FEKTIRYASR KAYAESRPRI KGRFAKRTET ENDDIFLSHV YASAAHAQYG VVPTF
Arabidopsis Description
COL5Zinc finger protein CONSTANS-LIKE 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHH8]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.