Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G364500.1 | Wheat | mitochondrion, nucleus | 94.84 | 95.28 |
| TraesCS5A01G541300.1 | Wheat | nucleus | 87.79 | 90.78 |
| GSMUA_Achr5P15400_001 | Banana | nucleus | 24.88 | 30.64 |
| GSMUA_Achr5P13470_001 | Banana | nucleus | 25.35 | 29.35 |
| Os07t0261200-01 | Rice | nucleus | 34.27 | 28.4 |
| Zm00001d024909_P001 | Maize | cytosol, extracellular, nucleus | 30.05 | 26.67 |
| OQU81054 | Sorghum | cytosol, extracellular, nucleus | 30.52 | 26.53 |
| TraesCS1B01G233600.1 | Wheat | nucleus | 35.68 | 26.3 |
| GSMUA_Achr4P30370_001 | Banana | nucleus | 30.99 | 23.16 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G372700.1 | EnsemblPlantsGene:TraesCS4B01G372700 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0009628 | GO:GO:0009791 | GO:GO:0048579 | InterPro:CCT_domain | InterPro:IPR010402 | PANTHER:PTHR31319 |
| PANTHER:PTHR31319:SF9 | PFAM:PF06203 | PFscan:PS51017 | SEG:seg | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr4B:+:657515589..657517678
Molecular Weight (calculated)
24429.2 Da
IEP (calculated)
10.566
GRAVY (calculated)
-0.762
Length
213 amino acids
Sequence
(BLAST)
(BLAST)
001: MSMSCGLCGA NNCPRLMFSP IHHRHHHHQE HQLREHQFFA QGNHHHHHHG AAVDHPVPPP PANFDHRRTW TTPFHETAAA GNSSRLTLEV GVGGRHMAHL
101: VQPPARAHIV PFYGGAFTNT ISNEAIMTID TEMMVGPAHY PTMQERAAKV MRYREKRKRR RYDKQIRYES RKAYAELRPR VNGRFVKVPE AMASPSSPAL
201: PYDPSKLHLG WFR
101: VQPPARAHIV PFYGGAFTNT ISNEAIMTID TEMMVGPAHY PTMQERAAKV MRYREKRKRR RYDKQIRYES RKAYAELRPR VNGRFVKVPE AMASPSSPAL
201: PYDPSKLHLG WFR
001: MGFGLESIKS ISGGWGAAAR SCDACKSVTA AVFCRVDSAF LCIACDTRIH SFTRHERVWV CEVCEQAPAA VTCKADAAAL CVSCDADIHS ANPLASRHER
101: VPVETFFDSA ETAVAKISAS STFGILGSST TVDLTAVPVM ADDLGLCPWL LPNDFNEPAK IEIGTENMKG SSDFMFSDFD RLIDFEFPNS FNHHQNNAGG
201: DSLVPVQTKT EPLPLTNNDH CFDIDFCRSK LSAFTYPSQS VSHSVSTSSI EYGVVPDGNT NNSVNRSTIT SSTTGGDHQA SSMDREARVL RYREKRKNRK
301: FEKTIRYASR KAYAESRPRI KGRFAKRTET ENDDIFLSHV YASAAHAQYG VVPTF
101: VPVETFFDSA ETAVAKISAS STFGILGSST TVDLTAVPVM ADDLGLCPWL LPNDFNEPAK IEIGTENMKG SSDFMFSDFD RLIDFEFPNS FNHHQNNAGG
201: DSLVPVQTKT EPLPLTNNDH CFDIDFCRSK LSAFTYPSQS VSHSVSTSSI EYGVVPDGNT NNSVNRSTIT SSTTGGDHQA SSMDREARVL RYREKRKNRK
301: FEKTIRYASR KAYAESRPRI KGRFAKRTET ENDDIFLSHV YASAAHAQYG VVPTF
Arabidopsis Description
COL5Zinc finger protein CONSTANS-LIKE 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHH8]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.