Factsheet for Os07t0261200-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P15400_001	Banana	nucleus	32.3	47.98
OQU81054	Sorghum	cytosol, extracellular, nucleus	40.86	42.86
GSMUA_Achr5P13470_001	Banana	nucleus	29.57	41.3
Zm00001d024909_P001	Maize	cytosol, extracellular, nucleus	38.52	41.25
Os10t0560400-01	Rice	cytosol, nucleus, plastid	47.47	41.08
TraesCS4D01G364400.1	Wheat	nucleus	29.57	35.85
TraesCS5A01G541200.1	Wheat	nucleus	29.57	35.85
GSMUA_Achr4P30370_001	Banana	nucleus	38.13	34.39
TraesCS4B01G372700.1	Wheat	mitochondrion, nucleus	28.4	34.27
TraesCS5A01G541300.1	Wheat	nucleus	27.24	33.98
TraesCS4D01G364500.1	Wheat	mitochondrion, nucleus	28.02	33.96

Protein Annotations

EntrezGene:107276161	MapMan:35.1	ProteinID:AEG78653.1	ProteinID:BAC07164.1	ProteinID:BAJ53926.1	ProteinID:BAJ53928.1
ProteinID:BAT00895.1	InterPro:CCT_domain	UniProt:E5RQA1	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987
GO:GO:0048579	InterPro:IPR010402	EnsemblPlantsGene:Os07g0261200	EnsemblPlants:Os07t0261200-01	PFAM:PF06203	PFscan:PS51017
PANTHER:PTHR31319	PANTHER:PTHR31319:SF9	UniParc:UPI00004FB4FC	RefSeq:XP_015646270.1	SEG:seg	:

Description

HEADING DATE 7CCT(CONSTANS, CONSTANS-LIKE, and TIMING OF CHLOROPHYLL A/B BINDING1) domain protein, Heading date, Long-day repression, Regulator of growth, development, and stress-response (Os07t0261200-01)

Coordinates

chr7:-:9152377..9155030

Molecular Weight (calculated)

27309.1 Da

IEP (calculated)

5.959

GRAVY (calculated)

-0.486

Length

257 amino acids

Sequence
(BLAST)

001: MSMGPAAGEG CGLCGADGGG CCSRHRHDDD GFPFVFPPSA CQGIGAPAPP VHEFQFFGND GGGDDGESVA WLFDDYPPPS PVAAAAGMHH RQPPYDGVVA
101: PPSLFRRNTG AGGLTFDVSL GERPDLDAGL GLGGGGGRHA EAAASATIMS YCGSTFTDAA SSMPKEMVAA MADDGESLNP NTVVGAMVER EAKLMRYKEK
201: RKKRCYEKQI RYASRKAYAE MRPRVRGRFA KEPDQEAVAP PSTYVDPSRL ELGQWFR

Best Arabidopsis Sequence Match ( AT5G24930.1 )
(BLAST)

001: MASKLCDSCK SATAALYCRP DAAFLCLSCD SKVHAANKLA SRHARVWMCE VCEQAPAHVT CKADAAALCV TCDRDIHSAN PLARRHERVP VTPFYDSVSS
101: DGSVKHTAVN FLDDCYFSDI DGNGSREEEE EEAASWLLLP NPKTTTTATA GIVAVTSAEE VPGDSPEMNT GQQYLFSDPD PYLDLDYGNV DPKVESLEQN
201: SSGTDGVVPV ENRTVRIPTV NENCFEMDFT GGSKGFTYGG GYNCISHSVS SSSMEVGVVP DGGSVADVSY PYGGPATSGA DPGTQRAVPL TSAEREARVM
301: RYREKRKNRK FEKTIRYASR KAYAEMRPRI KGRFAKRTDT NESNDVVGHG GIFSGFGLVP TF

Arabidopsis Description

COL4Zinc finger protein CONSTANS-LIKE 4 [Source:UniProtKB/Swiss-Prot;Acc:Q940T9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.