CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d024909_P001	Maize	cytosol, extracellular, nucleus	62.45	63.75
GSMUA_Achr5P13470_001	Banana	nucleus	31.02	41.3
Os07t0261200-01	Rice	nucleus	42.86	40.86
GSMUA_Achr5P15400_001	Banana	nucleus	28.16	39.88
TraesCS5A01G541200.1	Wheat	nucleus	27.35	31.6
TraesCS4D01G364400.1	Wheat	nucleus	26.53	30.66
TraesCS4B01G372700.1	Wheat	mitochondrion, nucleus	26.53	30.52
TraesCS4D01G364500.1	Wheat	mitochondrion, nucleus	26.12	30.19
GSMUA_Achr4P30370_001	Banana	nucleus	34.69	29.82
TraesCS5A01G541300.1	Wheat	nucleus	24.49	29.13
OQU92139	Sorghum	nucleus	38.78	21.4

Protein Annotations

MapMan:35.1	UniProt:A0A1Z5RB97	InterPro:CCT_domain	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007275
GO:GO:0008150	GO:GO:0009628	GO:GO:0009791	GO:GO:0048579	InterPro:IPR010402	EnsemblPlants:OQU81054
ProteinID:OQU81054	ProteinID:OQU81054.1	PFAM:PF06203	PFscan:PS51017	PANTHER:PTHR31319	PANTHER:PTHR31319:SF9
EnsemblPlantsGene:SORBI_3006G004400	UniParc:UPI0001A86BC8	RefSeq:XP_002446018.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:+:697459..700101

Molecular Weight (calculated)

26897.2 Da

IEP (calculated)

6.694

GRAVY (calculated)

-0.659

Length

245 amino acids

Sequence
(BLAST)

001: MSGPACGVCG AAACCRHLFH TGDENDDFNS RRALFSVFPA AVHHHEPSPS SMQQQPPAGC LHEFQFFGHQ DNDDHQESIA WLFDHPPPPA HDVESTTTTA
101: ENQQPHHRAF DPFGTEGNGL TFEVDARLGL GSGGAARQTA ETAAASATIM SFCGSTFTDA ASSRLKEPTL TDDSQLQMPV GQSTEREAKL MRYKEKRMRR
201: CYEKQIRYAS RKAYAQVRPR VKGRFAKVTE ACSATADNVG NDHLL

Best Arabidopsis Sequence Match ( AT5G24930.1 )
(BLAST)

001: MASKLCDSCK SATAALYCRP DAAFLCLSCD SKVHAANKLA SRHARVWMCE VCEQAPAHVT CKADAAALCV TCDRDIHSAN PLARRHERVP VTPFYDSVSS
101: DGSVKHTAVN FLDDCYFSDI DGNGSREEEE EEAASWLLLP NPKTTTTATA GIVAVTSAEE VPGDSPEMNT GQQYLFSDPD PYLDLDYGNV DPKVESLEQN
201: SSGTDGVVPV ENRTVRIPTV NENCFEMDFT GGSKGFTYGG GYNCISHSVS SSSMEVGVVP DGGSVADVSY PYGGPATSGA DPGTQRAVPL TSAEREARVM
301: RYREKRKNRK FEKTIRYASR KAYAEMRPRI KGRFAKRTDT NESNDVVGHG GIFSGFGLVP TF

Arabidopsis Description

COL4Zinc finger protein CONSTANS-LIKE 4 [Source:UniProtKB/Swiss-Prot;Acc:Q940T9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.