Factsheet for GSMUA_Achr4P30370_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P15400_001	Banana	nucleus	31.93	52.6
GSMUA_Achr5P13470_001	Banana	nucleus	31.93	49.46
Zm00001d000176_P001	Maize	nucleus	33.68	39.18
Os07t0261200-01	Rice	nucleus	34.39	38.13
Zm00001d029885_P001	Maize	cytosol, nucleus, plastid	36.49	36.75
OQU81054	Sorghum	cytosol, extracellular, nucleus	29.82	34.69
Zm00001d024909_P001	Maize	cytosol, extracellular, nucleus	29.12	34.58
Os10t0560400-01	Rice	cytosol, nucleus, plastid	35.79	34.34
TraesCS1A01G220300.1	Wheat	nucleus	34.39	33.68
TraesCS1B01G233600.1	Wheat	nucleus	33.68	33.22
TraesCS1D01G221800.1	Wheat	nucleus	33.68	33.22
TraesCS5A01G541300.1	Wheat	nucleus	22.46	31.07
TraesCS4B01G372700.1	Wheat	mitochondrion, nucleus	23.16	30.99
TraesCS4D01G364500.1	Wheat	mitochondrion, nucleus	22.46	30.19
TraesCS4D01G364400.1	Wheat	nucleus	21.75	29.25
TraesCS5A01G541200.1	Wheat	nucleus	21.75	29.25
OQU92139	Sorghum	nucleus	37.19	23.87
HORVU1Hr1G056120.3	Barley	cytosol	20.0	19.26

Protein Annotations

EnsemblPlants:GSMUA_Achr4P30370_001	EnsemblPlants:GSMUA_Achr4T30370_001	EnsemblPlantsGene:GSMUA_Achr4G30370_001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:CCT_domain	InterPro:IPR010402
PANTHER:PTHR31319	PANTHER:PTHR31319:SF9	PFAM:PF06203	PFscan:PS51017	SEG:seg	UniParc:UPI0002967A72
UniProt:M0STE9	MapMan:35.2	:	:	:	:

Description

Putative CCT motif family protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G30370_001]

Coordinates

chr4:+:28007587..28008943

Molecular Weight (calculated)

31549.0 Da

IEP (calculated)

8.472

GRAVY (calculated)

-0.746

Length

285 amino acids

Sequence
(BLAST)

001: MAMIPPRKKS SDRLYLFLAP HCRPHTPPFN SHHTSAALPS PYPAAALNHM IEVMSSSNPC DVCRGAGGPC PRCTDLNRAA PTFDDPVIRG PGELREFQFF
101: GHDSAVAWMF NDLNYDGPPP EEERPPVPSG YQPLCSLRET SDEFGDGLTF DVCLSATRPP DSIQVSTAAG LAMRQPASSA TIMSFSGTTF TDASSGSNQE
201: VGHPTDGGRG SDASREREAK IMRYKEKRKK RRYEKQVRYE SRKAYAEMRP RVKGRFAKTL AANDQPPPPE RSYDPNSLGF SWFRS

Best Arabidopsis Sequence Match ( AT5G24930.1 )
(BLAST)

001: MASKLCDSCK SATAALYCRP DAAFLCLSCD SKVHAANKLA SRHARVWMCE VCEQAPAHVT CKADAAALCV TCDRDIHSAN PLARRHERVP VTPFYDSVSS
101: DGSVKHTAVN FLDDCYFSDI DGNGSREEEE EEAASWLLLP NPKTTTTATA GIVAVTSAEE VPGDSPEMNT GQQYLFSDPD PYLDLDYGNV DPKVESLEQN
201: SSGTDGVVPV ENRTVRIPTV NENCFEMDFT GGSKGFTYGG GYNCISHSVS SSSMEVGVVP DGGSVADVSY PYGGPATSGA DPGTQRAVPL TSAEREARVM
301: RYREKRKNRK FEKTIRYASR KAYAEMRPRI KGRFAKRTDT NESNDVVGHG GIFSGFGLVP TF

Arabidopsis Description

COL4Zinc finger protein CONSTANS-LIKE 4 [Source:UniProtKB/Swiss-Prot;Acc:Q940T9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.