Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX84944 | Canola | cytosol | 83.49 | 83.87 |
| Bra032805.1-P | Field mustard | cytosol | 83.26 | 83.64 |
| CDY27594 | Canola | cytosol | 83.26 | 83.45 |
| AT5G47950.1 | Thale cress | cytosol | 39.68 | 40.61 |
| AT5G47980.1 | Thale cress | cytosol | 40.83 | 40.18 |
| AT4G15390.1 | Thale cress | cytosol | 40.83 | 39.91 |
| AT3G26040.1 | Thale cress | cytosol | 39.91 | 39.37 |
| AT4G15400.1 | Thale cress | cytosol | 38.99 | 39.08 |
| AT3G30280.1 | Thale cress | cytosol | 38.76 | 38.15 |
| AT5G23970.1 | Thale cress | cytosol | 35.32 | 35.98 |
| AT1G24430.1 | Thale cress | cytosol | 33.49 | 33.56 |
Protein Annotations
| Gene3D:3.30.559.10 | MapMan:50.2.3 | EntrezGene:839058 | ProteinID:AAF97955.1 | ProteinID:AEE30528.1 | ProteinID:ANM58496.1 |
| ArrayExpress:AT1G24420 | EnsemblPlantsGene:AT1G24420 | RefSeq:AT1G24420 | TAIR:AT1G24420 | RefSeq:AT1G24420-TAIR-G | EnsemblPlants:AT1G24420.1 |
| TAIR:AT1G24420.1 | Unigene:At.51754 | InterPro:CAT-like_dom_sf | ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0016740 | GO:GO:0016747 | InterPro:IPR023213 | RefSeq:NP_001319075.1 | RefSeq:NP_173851.1 | PFAM:PF02458 |
| PO:PO:0009005 | PO:PO:0020100 | PANTHER:PTHR31623 | PANTHER:PTHR31623:SF15 | UniProt:Q9FYM1 | InterPro:Transferase |
| UniParc:UPI00000396F6 | SEG:seg | : | : | : | : |
Description
F21J9.8 [Source:UniProtKB/TrEMBL;Acc:Q9FYM1]
Coordinates
chr1:+:8656021..8657997
Molecular Weight (calculated)
48827.5 Da
IEP (calculated)
5.283
GRAVY (calculated)
0.006
Length
436 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKNVEILSR EIVKPSSPTP DDKRILNLSL LDILSSPMYT GALLFYAADP QNLLGFSTEE TSLKLKKSLS KTLPIFYPLA GRIIGSFVEC NDEGAVFIEA
101: RVDHLLSEFL KCPVPESLEL LIPVEAKSRE AVTWPVLLIQ ANFFSCGGLV ITICVSHKIT DATSLAMFIR GWAESSRGLG ITLIPSFTAS EVFPKPLDEL
201: PSKPMDRKEE VEEMSCVTKR FVFDASKIKK LRAKASRNLV KNPTRVEAVT ALFWRCVTKV SRLSSLTPRT SVLQILVNLR GKVDSLCENT IGNMLSLMIL
301: KNEEAAIERI QDVVDEIRRA KEIFSLNCKE MSKSSSRIFE LLEEIGKVYG RGNEMDLWMS NSWCKLGLYD ADFGWGKPVW VTGRGTSHFK NLMLLIDTKD
401: GEGIEAWITL TEEQMSLFEC DQELLESASL NPPVLI
101: RVDHLLSEFL KCPVPESLEL LIPVEAKSRE AVTWPVLLIQ ANFFSCGGLV ITICVSHKIT DATSLAMFIR GWAESSRGLG ITLIPSFTAS EVFPKPLDEL
201: PSKPMDRKEE VEEMSCVTKR FVFDASKIKK LRAKASRNLV KNPTRVEAVT ALFWRCVTKV SRLSSLTPRT SVLQILVNLR GKVDSLCENT IGNMLSLMIL
301: KNEEAAIERI QDVVDEIRRA KEIFSLNCKE MSKSSSRIFE LLEEIGKVYG RGNEMDLWMS NSWCKLGLYD ADFGWGKPVW VTGRGTSHFK NLMLLIDTKD
401: GEGIEAWITL TEEQMSLFEC DQELLESASL NPPVLI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.