CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032805.1-P	Field mustard	cytosol	96.78	97.0
CDX84944	Canola	cytosol	95.86	96.08
AT1G24420.1	Thale cress	cytosol	83.45	83.26
CDX73371	Canola	cytosol	2.53	68.75
CDY58243	Canola	cytosol	38.85	43.22
CDY68340	Canola	cytosol	8.97	41.05
CDY22928	Canola	cytosol	41.38	40.27
CDY57231	Canola	cytosol	41.38	40.27
CDY68964	Canola	cytosol, peroxisome, plastid	39.54	39.72
CDY68339	Canola	cytosol	28.97	39.62
CDY60221	Canola	cytosol	38.39	39.29
CDY22927	Canola	cytosol	39.54	39.27
CDY52590	Canola	cytosol	39.08	38.99
CDY69720	Canola	cytosol	38.39	38.93
CDY25643	Canola	cytosol	38.62	38.53
CDX87148	Canola	cytosol	37.7	38.23
CDY25648	Canola	cytosol	37.93	37.93
CDY39174	Canola	mitochondrion	40.0	37.91
CDX89532	Canola	cytosol	37.7	37.7
CDY04190	Canola	mitochondrion	39.31	37.25

Protein Annotations

EnsemblPlants:CDY27594	EnsemblPlantsGene:GSBRNA2T00038338001	Gene3D:3.30.559.10	GO:A0A078GQX3	GO:GO:0003674	GO:GO:0003824
GO:GO:0016740	GO:GO:0016747	InterPro:CAT-like_dom_sf	InterPro:IPR023213	InterPro:Transferase	PANTHER:PTHR31623
PANTHER:PTHR31623:SF15	PFAM:PF02458	ProteinID:CDY27594	ProteinID:CDY27594.1	SEG:seg	UniParc:UPI0004EDB2DA
UniProt:A0A078GQX3	MapMan:50.2.3	:	:	:	:

Description

BnaA09g28130DBnaA09g28130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GQX3]

Coordinates

chrLK032207:-:223783..225090

Molecular Weight (calculated)

48262.8 Da

IEP (calculated)

6.527

GRAVY (calculated)

0.007

Length

435 amino acids

Sequence
(BLAST)

001: MENKVEVLSR EVIKPSSPTP NDKRILRLSL LDTLSSPMYT GALLFYSADP HNLLGSSSEG TSLKLKKSLS KTLPIFYPLA GRITGSFIEC NDEGAVFIEA
101: RVDHLLSEFL KCPVPESLEP LIPVEALSRE AVTWPVLLIQ ANFFSCGGLV ITICVSHKIT DATSLAMFIR GWAETARGLG ITMTPSFTAS KFFPLPPDEL
201: SLKPMDNKVE VEEMKCVTKR FVFDALKIKK LRDKASSNIV KNPTRVEAVT ALFWRCATKA SRLSSSTTRT SVLLIPVSIR GKVDSLPENT IGNMLSIMIL
301: KNQEGMIDGI QDVVSELRKT KENFSLSCKE MSSSRVLESL AEIGKVYARG NEMDLWMSNS WCKLGMYEAD FGWGKPVWVT GRGTSSFKNF MLLIDAKDGD
401: GIEAWITLMD KHMSLFECDE ELLESASLNP PVLIY

Best Arabidopsis Sequence Match ( AT1G24420.1 )
(BLAST)

001: MEKNVEILSR EIVKPSSPTP DDKRILNLSL LDILSSPMYT GALLFYAADP QNLLGFSTEE TSLKLKKSLS KTLPIFYPLA GRIIGSFVEC NDEGAVFIEA
101: RVDHLLSEFL KCPVPESLEL LIPVEAKSRE AVTWPVLLIQ ANFFSCGGLV ITICVSHKIT DATSLAMFIR GWAESSRGLG ITLIPSFTAS EVFPKPLDEL
201: PSKPMDRKEE VEEMSCVTKR FVFDASKIKK LRAKASRNLV KNPTRVEAVT ALFWRCVTKV SRLSSLTPRT SVLQILVNLR GKVDSLCENT IGNMLSLMIL
301: KNEEAAIERI QDVVDEIRRA KEIFSLNCKE MSKSSSRIFE LLEEIGKVYG RGNEMDLWMS NSWCKLGLYD ADFGWGKPVW VTGRGTSHFK NLMLLIDTKD
401: GEGIEAWITL TEEQMSLFEC DQELLESASL NPPVLI

Arabidopsis Description

F21J9.8 [Source:UniProtKB/TrEMBL;Acc:Q9FYM1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.