CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04190	Canola	mitochondrion	96.3	96.3
AT3G26040.1	Thale cress	cytosol	82.79	85.97
CDY68340	Canola	cytosol	8.5	41.05
CDY27594	Canola	cytosol	37.91	40.0
CDX84944	Canola	cytosol	37.47	39.63
CDX73371	Canola	cytosol	1.31	37.5
CDY58243	Canola	cytosol	30.72	36.06
CDY68964	Canola	cytosol, peroxisome, plastid	33.77	35.8
CDY22927	Canola	cytosol	33.77	35.39
CDY60221	Canola	cytosol	32.68	35.29
KRH10465	Soybean	cytosol	33.55	35.16
CDY52590	Canola	cytosol	33.12	34.86
CDY68339	Canola	cytosol	23.97	34.59
CDY57231	Canola	cytosol	32.46	33.33
CDY22928	Canola	cytosol	32.24	33.11
CDY25643	Canola	cytosol	30.94	32.57
CDY69720	Canola	cytosol	29.85	31.93
CDX87148	Canola	cytosol	29.63	31.7
CDY25648	Canola	cytosol	29.85	31.49
CDX89532	Canola	cytosol	29.85	31.49

Protein Annotations

EnsemblPlants:CDY39174	EnsemblPlantsGene:GSBRNA2T00067368001	Gene3D:3.30.559.10	GO:A0A078HP47	GO:GO:0003674	GO:GO:0003824
GO:GO:0016740	GO:GO:0016747	InterPro:CAT-like_dom_sf	InterPro:IPR023213	InterPro:Transferase	ncoils:Coil
PANTHER:PTHR31623	PANTHER:PTHR31623:SF15	PFAM:PF02458	ProteinID:CDY39174	ProteinID:CDY39174.1	UniParc:UPI0004EE6BAA
UniProt:A0A078HP47	MapMan:50.2.3	:	:	:	:

Description

BnaC09g21700DBnaC09g21700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HP47]

Coordinates

chrLK032442:-:186510..187889

Molecular Weight (calculated)

51021.3 Da

IEP (calculated)

9.662

GRAVY (calculated)

-0.164

Length

459 amino acids

Sequence
(BLAST)

001: MTLARTFIRR FHQKSLTRRV EVISRDIIKP SSPTPNHLKN FKLSLLEQLG PTIFGPMLFF YSANNRIKQT EQLQNLKKSL SETLTHFYPL AGRLNGNISI
101: NCNDSGADFL EAQVNSPLSN LLQEPSSEVL EQLIPTSVDS TEARTKLLLA QATFFKCGGM AIGVCVSHKL ADATSVGLFM KSWSAISSRG TIKTVGSPVF
201: DTLKIFPPGN FSETSPAPVV EPEIKMNQTL SKRFVFDSWS IEALQAKASS FEVSQPTRVE AVSAFIWKLA MKATRTVSRT SKPSILANSA SLRSRVSPPF
301: TKNSIGNLVS YFAAKAEEGE KQRKLQTLVA EIRRAKQRFR DDHIPKLVGN GDATEVICNH QKEAGDMIAS GGFDFYILTS ACRFGLYEID FGWGKPVWFA
401: FPSVRQKNIV ALLDTKEGGG IEAWVNLNEQ EMKLFEEDRE LLDFASVNPS VIQPFLHVL

Best Arabidopsis Sequence Match ( AT3G26040.1 )
(BLAST)

001: MRVDVVSRDI IKPSSPTPNH LKKFKLSLLE QLGPTIFGPM VFFYSANNSI KPTEQLQMLK KSLSETLTHF YPLAGRLKGN ISIDCNDSGA DFLEARVNSP
101: LSNLLLEPSS DSLQQLIPTS VDSIETRTRL LLAQASFFEC GSMSIGVCIS HKLADATSIG LFMKSWAAIS SRGSIKTIGA PVFDTVKIFP PGNFSETSPA
201: PVVEPEIMMN QTLSKRFIFD SSSIQALQAK ASSFEVNQPT RVEAVSALIW KSAMKATRTV SGTSKPSILA NSVSLRSRVS PPFTKNSIGN LVSYFAAKAE
301: EGINQTKLQT LVSKIRKAKQ RFRDIHIPKL VGNPNATEII CSYQKEAGDM IASGDFDFYI FSSACRFGLY ETDFGWGKPV WVGFPSVRQK NIVTLLDTKE
401: AGGIEAWVNL NEQEMNLFEQ DRELLQFASL NPSVIQPFLH VL

Arabidopsis Description

HXXXD-type acyl-transferase family protein [Source:UniProtKB/TrEMBL;Acc:F4JBC7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.