Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024665.1-P | Field mustard | nucleus | 46.03 | 62.37 |
| CDY16214 | Canola | nucleus | 51.98 | 57.21 |
| AT4G36740.2 | Thale cress | nucleus | 26.98 | 31.34 |
| AT5G66700.1 | Thale cress | nucleus | 25.0 | 27.63 |
| AT2G18550.1 | Thale cress | nucleus | 23.02 | 26.36 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:10723019 | MapMan:15.5.3.1 | UniProt:A0A1P8AT71 | ProteinID:ANM59800.1 | ArrayExpress:AT1G27045 |
| EnsemblPlantsGene:AT1G27045 | RefSeq:AT1G27045 | TAIR:AT1G27045 | RefSeq:AT1G27045-TAIR-G | EnsemblPlants:AT1G27045.4 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:HTH_motif | InterPro:Homeobox-like_sf |
| InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:Leu_zip_homeo | RefSeq:NP_001322131.1 | PFAM:PF00046 |
| PFAM:PF02183 | PRINTS:PR00031 | ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF136 |
| SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI0008487DEF | SEG:seg | : | : |
Description
Homeobox-leucine zipper protein family [Source:TAIR;Acc:AT1G27045]
Coordinates
chr1:+:9391609..9393088
Molecular Weight (calculated)
29699.7 Da
IEP (calculated)
4.992
GRAVY (calculated)
-0.863
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MENSDTDSEV FFWFQNQNQN HSHKFPSSCF PPSSHSAFYG SSSMINTETA TMDEEDVCES YMMREITKKR KLTPIQLRLL EESFEEEKRL EPDRKLWLAE
101: KLGLQPSQVA VWFQNRRARY KTKQLEHDCD SLKASYAKLK TDWDILFVQN QTLKSKVQFL NRLTSHYFQE SVQNFDDTFK QVDLLKEKLK MQENLETQSI
201: ERKRLGEEGS SVKSDNTQYS EEEGLENQYS FPELAVLGFY YDPTLTASNL RL
101: KLGLQPSQVA VWFQNRRARY KTKQLEHDCD SLKASYAKLK TDWDILFVQN QTLKSKVQFL NRLTSHYFQE SVQNFDDTFK QVDLLKEKLK MQENLETQSI
201: ERKRLGEEGS SVKSDNTQYS EEEGLENQYS FPELAVLGFY YDPTLTASNL RL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.