Factsheet for Bra024665.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16214	Canola	nucleus	81.72	66.38
AT1G27045.4	Thale cress	nucleus	62.37	46.03
Bra017780.1-P	Field mustard	nucleus	32.26	27.65
Bra028099.1-P	Field mustard	nucleus	31.72	26.82
Bra040941.1-P	Field mustard	nucleus	31.72	26.58
Bra012093.1-P	Field mustard	nucleus	31.18	25.89
Bra037154.1-P	Field mustard	nucleus	30.11	24.89
Bra010573.1-P	Field mustard	nucleus	24.19	24.86
Bra031819.1-P	Field mustard	nucleus	30.65	24.68

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	EnsemblPlantsGene:Bra024665	EnsemblPlants:Bra024665.1	EnsemblPlants:Bra024665.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf
InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	UniProt:M4E7B0	PFAM:PF00046
PFAM:PF02183	PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF136
SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI0002542128	SEG:seg	:	:

Description

AT1G27050 (E=2e-050) ATHB54 | ATHB54 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 54); nucleic acid binding / transcription factor

Coordinates

chrA09:+:23714579..23715201

Molecular Weight (calculated)

21554.3 Da

IEP (calculated)

4.578

GRAVY (calculated)

-0.860

Length

186 amino acids

Sequence
(BLAST)

001: MSNTETNTVD EDDVCESYKM RETTKKRKLT PIQLCLLEES FEEDKRLEPD RKLWLAEKLG LQPTQVAVWF QNRRARFKTR QLELDCDSLK ASYAKLKTDR
101: DILFRQNQAL ENKVALLKEK LQFQEKLETQ SMEAEKLGEE GSSVKSDNTQ YTEEEEGLGS NQYSFPELAA LGFYYDPTMS ASNLGL

Best Arabidopsis Sequence Match ( AT1G27045.5 )
(BLAST)

001: MINTETATMD EEDVCESYMM REITKKRKLT PIQLRLLEES FEEEKRLEPD RKLWLAEKLG LQPSQVAVWF QNRRARYKTK QLEHDCDSLK ASYAKLKTDW
101: DILFVQNQTL KSKVDLLKEK LKMQENLETQ SIERKRLGEE GSSVKSDNTQ YSEEEGLENQ YSFPELAVLG FYYDPTLTAS NLRL

Arabidopsis Description

Homeobox-leucine zipper protein family [Source:TAIR;Acc:AT1G27045]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.