Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX72601 | Canola | nucleus | 95.85 | 95.85 |
| AT4G36740.2 | Thale cress | nucleus | 79.72 | 79.72 |
| Bra010573.1-P | Field mustard | nucleus | 58.06 | 69.61 |
| Bra040941.1-P | Field mustard | nucleus | 69.12 | 67.57 |
| Bra028099.1-P | Field mustard | nucleus | 64.98 | 64.09 |
| Solyc02g085630.2.1 | Tomato | nucleus | 56.68 | 58.02 |
| PGSC0003DMT400011464 | Potato | nucleus | 54.38 | 56.46 |
| PGSC0003DMT400033036 | Potato | nucleus | 55.3 | 56.07 |
| Solyc02g062960.2.1 | Tomato | nucleus | 52.53 | 55.61 |
| KRH76853 | Soybean | nucleus | 54.84 | 55.61 |
| VIT_04s0023g01330.t01 | Wine grape | nucleus | 53.0 | 54.5 |
| KRH28621 | Soybean | nucleus | 53.0 | 53.49 |
| Solyc03g034120.2.1 | Tomato | nucleus | 47.47 | 50.0 |
| PGSC0003DMT400045834 | Potato | nucleus | 48.39 | 49.76 |
| PGSC0003DMT400050373 | Potato | nucleus | 36.41 | 47.88 |
| KRH69950 | Soybean | nucleus | 46.08 | 47.17 |
| Solyc03g034110.2.1 | Tomato | nucleus | 46.08 | 46.95 |
| PGSC0003DMT400045855 | Potato | nucleus | 46.08 | 46.95 |
| GSMUA_Achr7P25990_001 | Banana | nucleus | 32.26 | 46.05 |
| GSMUA_Achr1P22640_001 | Banana | nucleus | 38.25 | 45.6 |
| Solyc03g034150.1.1 | Tomato | nucleus | 42.4 | 45.54 |
| Bra012093.1-P | Field mustard | nucleus | 47.0 | 45.54 |
| Solyc03g034130.2.1 | Tomato | nucleus | 47.0 | 45.54 |
| Bra037154.1-P | Field mustard | nucleus | 45.62 | 44.0 |
| PGSC0003DMT400045832 | Potato | nucleus | 46.54 | 43.53 |
| Bra031819.1-P | Field mustard | nucleus | 44.7 | 41.99 |
| HORVU2Hr1G092300.1 | Barley | nucleus | 24.88 | 40.0 |
| GSMUA_Achr4P07170_001 | Banana | nucleus | 36.41 | 39.3 |
| GSMUA_Achr8P31170_001 | Banana | nucleus | 37.79 | 39.23 |
| EER97443 | Sorghum | nucleus | 39.63 | 37.23 |
| Os07t0581700-01 | Rice | nucleus | 40.55 | 36.67 |
| Zm00001d006687_P001 | Maize | nucleus | 37.33 | 36.49 |
| Zm00001d021934_P001 | Maize | nucleus | 38.25 | 35.47 |
| TraesCS2B01G405700.1 | Wheat | nucleus | 35.94 | 35.29 |
| HORVU2Hr1G036680.2 | Barley | nucleus | 37.79 | 34.75 |
| TraesCS2D01G199200.1 | Wheat | nucleus | 37.33 | 34.03 |
| TraesCS2A01G188500.1 | Wheat | nucleus | 37.33 | 34.03 |
| Os03t0198600-01 | Rice | nucleus | 37.33 | 33.89 |
| TraesCS2B01G218800.1 | Wheat | nucleus | 36.87 | 33.61 |
| HORVU4Hr1G070610.1 | Barley | nucleus | 34.1 | 32.31 |
| Bra024665.1-P | Field mustard | nucleus | 27.65 | 32.26 |
| TraesCS4B01G261600.1 | Wheat | nucleus | 34.56 | 32.19 |
| TraesCS4D01G261600.1 | Wheat | nucleus | 34.56 | 32.05 |
| TraesCS4A01G040600.1 | Wheat | nucleus | 34.1 | 32.03 |
| TraesCS2D01G385500.1 | Wheat | nucleus | 35.94 | 31.58 |
| TraesCSU01G009800.1 | Wheat | nucleus | 35.48 | 31.56 |
| EER92693 | Sorghum | nucleus | 35.02 | 31.41 |
| Zm00001d028129_P002 | Maize | nucleus, plastid | 34.1 | 30.96 |
| Zm00001d048172_P001 | Maize | nucleus | 32.72 | 30.34 |
| HORVU2Hr1G092290.6 | Barley | nucleus | 32.26 | 30.04 |
| GSMUA_Achr4P14070_001 | Banana | plastid | 38.25 | 28.33 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | EnsemblPlantsGene:Bra017780 | EnsemblPlants:Bra017780.1 | EnsemblPlants:Bra017780.1-P | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS |
| InterPro:Homeobox_dom | InterPro:IPR001356 | UniProt:M4DMP5 | PFAM:PF00046 | PRINTS:PR00031 | ScanProsite:PS00027 |
| PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF281 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI0002540C5D |
| SEG:seg | : | : | : | : | : |
Description
AT4G36740 (E=2e-079) HB-5, ATHB40 | ATHB40 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 40); DNA binding / transcription factor
Coordinates
chrA03:-:30420161..30421721
Molecular Weight (calculated)
25557.7 Da
IEP (calculated)
4.727
GRAVY (calculated)
-0.966
Length
217 amino acids
Sequence
(BLAST)
(BLAST)
001: MNHTMDDDQN LAFISQLYPD VYTQILPQEE AVKPPKRRRK EIKRAVATGD GSNCFFRKRK LSDEQVNMLE MSFGDEHKLE SERKDRLAAE LGLDPRQVAV
101: WFQNRRARWK NKRLEEEYNN LKNSHENVVA DKCRLESELL QLKEQLYDAE REIQRLAERV ERGSSNSPIS SSVSVEANET PFFEDYNVRD DGDDYNLFYP
201: VPENTYIDGL EWANLYI
101: WFQNRRARWK NKRLEEEYNN LKNSHENVVA DKCRLESELL QLKEQLYDAE REIQRLAERV ERGSSNSPIS SSVSVEANET PFFEDYNVRD DGDDYNLFYP
201: VPENTYIDGL EWANLYI
001: MNYTVDDQNM AFISQLYPDV YTQIVQPVGE VKQPKRRRKK TKGSVASADG GNGLFRKRKL TDEQVNMLEM SFGDEHKLES ERKDRLAAEL GLDPRQVAVW
101: FQNRRARWKN KRLEEEYNKL KNSHDNVVVD KCRLESEVIQ LKEQLYDAER EIQRLAERVE GGSSNSPISS SVSVEANETP FFGDYKVGDD GDDYDHLFYP
201: VPENSYIDEA EWMSLYI
101: FQNRRARWKN KRLEEEYNKL KNSHDNVVVD KCRLESEVIQ LKEQLYDAER EIQRLAERVE GGSSNSPISS SVSVEANETP FFGDYKVGDD GDDYDHLFYP
201: VPENSYIDEA EWMSLYI
Arabidopsis Description
HB-5homeobox protein 40 [Source:TAIR;Acc:AT4G36740]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.