Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G040600.1 | Wheat | nucleus | 90.83 | 90.04 |
| TraesCS4B01G261600.1 | Wheat | nucleus | 90.83 | 89.27 |
| TraesCS4D01G261600.1 | Wheat | nucleus | 80.79 | 79.06 |
| Os03t0198600-01 | Rice | nucleus | 63.76 | 61.09 |
| EER92693 | Sorghum | nucleus | 63.32 | 59.92 |
| Zm00001d028129_P002 | Maize | nucleus, plastid | 61.57 | 59.0 |
| Zm00001d048172_P001 | Maize | nucleus | 55.46 | 54.27 |
| GSMUA_Achr7P25990_001 | Banana | nucleus | 31.44 | 47.37 |
| GSMUA_Achr1P22640_001 | Banana | nucleus | 36.24 | 45.6 |
| GSMUA_Achr4P07170_001 | Banana | nucleus | 39.3 | 44.78 |
| CDY67008 | Canola | nucleus | 31.0 | 43.03 |
| HORVU2Hr1G036680.2 | Barley | nucleus | 44.1 | 42.8 |
| HORVU2Hr1G092300.1 | Barley | nucleus | 24.89 | 42.22 |
| GSMUA_Achr8P31170_001 | Banana | nucleus | 35.81 | 39.23 |
| HORVU2Hr1G092290.6 | Barley | nucleus | 39.74 | 39.06 |
| KRH76853 | Soybean | nucleus | 35.81 | 38.32 |
| KRH28621 | Soybean | nucleus | 35.81 | 38.14 |
| AT4G36740.2 | Thale cress | nucleus | 34.93 | 36.87 |
| PGSC0003DMT400033036 | Potato | nucleus | 34.06 | 36.45 |
| CDX69241 | Canola | nucleus | 34.5 | 36.41 |
| CDY24769 | Canola | nucleus | 34.93 | 36.36 |
| CDX75593 | Canola | nucleus | 34.06 | 35.94 |
| CDY35477 | Canola | nucleus | 34.5 | 35.91 |
| Solyc02g085630.2.1 | Tomato | nucleus | 33.19 | 35.85 |
| Bra040941.1-P | Field mustard | nucleus | 34.5 | 35.59 |
| VIT_04s0023g01330.t01 | Wine grape | nucleus | 32.75 | 35.55 |
| KRH69950 | Soybean | nucleus | 32.75 | 35.38 |
| Solyc02g062960.2.1 | Tomato | nucleus | 31.44 | 35.12 |
| CDX72601 | Canola | nucleus | 33.19 | 35.02 |
| Bra028099.1-P | Field mustard | nucleus | 33.62 | 35.0 |
| CDY30312 | Canola | nucleus | 34.06 | 34.98 |
| CDY68376 | Canola | nucleus | 33.62 | 34.68 |
| PGSC0003DMT400011464 | Potato | nucleus | 31.44 | 34.45 |
| GSMUA_Achr4P14070_001 | Banana | plastid | 43.67 | 34.13 |
| Bra017780.1-P | Field mustard | nucleus | 32.31 | 34.1 |
| PGSC0003DMT400050373 | Potato | nucleus | 24.45 | 33.94 |
| CDY30761 | Canola | nucleus | 33.19 | 33.93 |
| AT5G66700.1 | Thale cress | nucleus | 33.62 | 33.77 |
| PGSC0003DMT400045834 | Potato | nucleus | 31.0 | 33.65 |
| AT2G18550.1 | Thale cress | nucleus | 32.31 | 33.64 |
| CDY70377 | Canola | nucleus | 32.75 | 33.48 |
| Bra012093.1-P | Field mustard | nucleus | 32.75 | 33.48 |
| Solyc03g034120.2.1 | Tomato | nucleus | 29.69 | 33.01 |
| CDX81374 | Canola | nucleus | 31.88 | 32.59 |
| Bra031819.1-P | Field mustard | nucleus | 32.75 | 32.47 |
| CDY52162 | Canola | nucleus | 32.75 | 32.47 |
| PGSC0003DMT400045855 | Potato | nucleus | 29.69 | 31.92 |
| Bra037154.1-P | Field mustard | nucleus | 31.0 | 31.56 |
| CDY57132 | Canola | nucleus | 31.0 | 31.56 |
| Solyc03g034110.2.1 | Tomato | nucleus | 29.26 | 31.46 |
| Bra010573.1-P | Field mustard | nucleus | 24.02 | 30.39 |
| Solyc03g034130.2.1 | Tomato | nucleus | 29.69 | 30.36 |
| PGSC0003DMT400045832 | Potato | nucleus | 30.57 | 30.17 |
| Solyc03g034150.1.1 | Tomato | nucleus | 25.76 | 29.21 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | EMBL:AK365295 | EMBL:AK370253 | ncoils:Coil | UniProt:F2DN27 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | EnsemblPlantsGene:HORVU4Hr1G070610 | EnsemblPlants:HORVU4Hr1G070610.1 | InterPro:HTH_motif |
| InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | PFAM:PF00046 | PRINTS:PR00031 |
| ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF262 | SMART:SM00389 | SUPFAM:SSF46689 |
| UniParc:UPI00020069EC | SEG:seg | : | : | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DN27]
Coordinates
chrchr4H:+:576958390..576960085
Molecular Weight (calculated)
25413.9 Da
IEP (calculated)
6.573
GRAVY (calculated)
-0.655
Length
229 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPEEGERLL FPSFVFPDSF PADDAAPVVS GEEQKKAGRQ RRRRRARQAA AGGEGGGDDA AKKRRLSDEQ AKFLEMSFRK ERKLETPRKV QLAAELGLDT
101: KQVAVWFQNR RARYKSKLIE EEFNKLRAAH DAVVVRNCHL EAELLRLKER LAETEEEKNK AMAAVATAGG SSPSSSSFST VTAMVGGQQF GMEEAEADFT
201: YMSEYAYTNY MMDLAAAGGY LGGAYDQFS
101: KQVAVWFQNR RARYKSKLIE EEFNKLRAAH DAVVVRNCHL EAELLRLKER LAETEEEKNK AMAAVATAGG SSPSSSSFST VTAMVGGQQF GMEEAEADFT
201: YMSEYAYTNY MMDLAAAGGY LGGAYDQFS
001: MNYTVDDQNM AFISQLYPDV YTQIVQPVGE VKQPKRRRKK TKGSVASADG GNGLFRKRKL TDEQVNMLEM SFGDEHKLES ERKDRLAAEL GLDPRQVAVW
101: FQNRRARWKN KRLEEEYNKL KNSHDNVVVD KCRLESEVIQ LKEQLYDAER EIQRLAERVE GGSSNSPISS SVSVEANETP FFGDYKVGDD GDDYDHLFYP
201: VPENSYIDEA EWMSLYI
101: FQNRRARWKN KRLEEEYNKL KNSHDNVVVD KCRLESEVIQ LKEQLYDAER EIQRLAERVE GGSSNSPISS SVSVEANETP FFGDYKVGDD GDDYDHLFYP
201: VPENSYIDEA EWMSLYI
Arabidopsis Description
HB-5homeobox protein 40 [Source:TAIR;Acc:AT4G36740]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.