Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY24769 | Canola | nucleus | 92.27 | 92.27 |
| CDX75593 | Canola | nucleus | 85.0 | 86.18 |
| CDX69241 | Canola | nucleus | 80.0 | 81.11 |
| AT4G36740.2 | Thale cress | nucleus | 76.36 | 77.42 |
| CDX72601 | Canola | nucleus | 75.91 | 76.96 |
| CDY30312 | Canola | nucleus | 67.27 | 66.37 |
| CDY68376 | Canola | nucleus | 66.82 | 66.22 |
| Solyc02g085630.2.1 | Tomato | nucleus | 55.91 | 58.02 |
| PGSC0003DMT400033036 | Potato | nucleus | 53.64 | 55.14 |
| VIT_04s0023g01330.t01 | Wine grape | nucleus | 52.73 | 54.98 |
| PGSC0003DMT400011464 | Potato | nucleus | 50.91 | 53.59 |
| KRH76853 | Soybean | nucleus | 51.82 | 53.27 |
| Solyc02g062960.2.1 | Tomato | nucleus | 49.09 | 52.68 |
| KRH28621 | Soybean | nucleus | 50.45 | 51.63 |
| CDY67008 | Canola | nucleus | 37.73 | 50.3 |
| Solyc03g034120.2.1 | Tomato | nucleus | 45.91 | 49.03 |
| PGSC0003DMT400050373 | Potato | nucleus | 35.91 | 47.88 |
| KRH69950 | Soybean | nucleus | 45.45 | 47.17 |
| PGSC0003DMT400045834 | Potato | nucleus | 45.0 | 46.92 |
| GSMUA_Achr7P25990_001 | Banana | nucleus | 32.27 | 46.71 |
| PGSC0003DMT400045855 | Potato | nucleus | 43.18 | 44.6 |
| Solyc03g034150.1.1 | Tomato | nucleus | 40.91 | 44.55 |
| GSMUA_Achr1P22640_001 | Banana | nucleus | 36.82 | 44.51 |
| CDY70377 | Canola | nucleus | 45.0 | 44.2 |
| CDY30761 | Canola | nucleus | 44.55 | 43.75 |
| Solyc03g034110.2.1 | Tomato | nucleus | 42.27 | 43.66 |
| Solyc03g034130.2.1 | Tomato | nucleus | 44.09 | 43.3 |
| CDY57132 | Canola | nucleus | 44.09 | 43.11 |
| CDX81374 | Canola | nucleus | 42.73 | 41.96 |
| CDY52162 | Canola | nucleus | 43.64 | 41.56 |
| PGSC0003DMT400045832 | Potato | nucleus | 43.64 | 41.38 |
| GSMUA_Achr4P07170_001 | Banana | nucleus | 35.91 | 39.3 |
| TraesCS2B01G405700.1 | Wheat | nucleus | 38.64 | 38.46 |
| HORVU2Hr1G092300.1 | Barley | nucleus | 22.73 | 37.04 |
| GSMUA_Achr8P31170_001 | Banana | nucleus | 35.0 | 36.84 |
| EER97443 | Sorghum | nucleus | 37.73 | 35.93 |
| HORVU2Hr1G036680.2 | Barley | nucleus | 38.18 | 35.59 |
| Zm00001d021934_P001 | Maize | nucleus | 37.73 | 35.47 |
| TraesCS2D01G199200.1 | Wheat | nucleus | 38.18 | 35.29 |
| Zm00001d006687_P001 | Maize | nucleus | 35.45 | 35.14 |
| Os07t0581700-01 | Rice | nucleus | 38.18 | 35.0 |
| TraesCS2B01G218800.1 | Wheat | nucleus | 37.73 | 34.87 |
| Os03t0198600-01 | Rice | nucleus | 37.73 | 34.73 |
| HORVU4Hr1G070610.1 | Barley | nucleus | 35.91 | 34.5 |
| TraesCS2D01G385500.1 | Wheat | nucleus | 38.64 | 34.41 |
| TraesCS4D01G261600.1 | Wheat | nucleus | 36.36 | 34.19 |
| TraesCS2A01G188500.1 | Wheat | nucleus | 36.82 | 34.03 |
| TraesCSU01G009800.1 | Wheat | nucleus | 37.73 | 34.02 |
| TraesCS4B01G261600.1 | Wheat | nucleus | 35.91 | 33.91 |
| TraesCS4A01G040600.1 | Wheat | nucleus | 35.45 | 33.77 |
| EER92693 | Sorghum | nucleus | 35.91 | 32.64 |
| Zm00001d028129_P002 | Maize | nucleus, plastid | 34.55 | 31.8 |
| Zm00001d048172_P001 | Maize | nucleus | 33.18 | 31.2 |
| HORVU2Hr1G092290.6 | Barley | nucleus | 31.36 | 29.61 |
| GSMUA_Achr4P14070_001 | Banana | plastid | 37.27 | 27.99 |
| CDY16214 | Canola | nucleus | 26.82 | 25.76 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | GO:A0A078HCH1 | UniProt:A0A078HCH1 | EnsemblPlants:CDY35477 | ProteinID:CDY35477 |
| ProteinID:CDY35477.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | EnsemblPlantsGene:GSBRNA2T00058501001 |
| InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | PFAM:PF00046 |
| PRINTS:PR00031 | ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF281 | SMART:SM00389 |
| SUPFAM:SSF46689 | UniParc:UPI0004EE6E7B | SEG:seg | : | : | : |
Description
BnaC03g61830DBnaC03g61830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HCH1]
Coordinates
chrLK032352:-:373687..374888
Molecular Weight (calculated)
25602.9 Da
IEP (calculated)
5.091
GRAVY (calculated)
-0.910
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MNPTASDHNM AFISQLYPDV YTHIVPQGEV KPPKRRRKKS KRAVAAGDGS NCLFKKRKLT DEQMNMLEMS FCDEHKLESE RKDKLAAELG LDPRQVAVWF
101: QNRRARWKNK RLEDEYNQLK SSHDNVVVDK CRLESEVLQL KEQLFDAERE IQRLAERVEG GSSNSPVSSS VSVEHNETSF FGDYKVEEDG DDYDNMVYPV
201: PENSYIDGEE WMNYQLNVIF
101: QNRRARWKNK RLEDEYNQLK SSHDNVVVDK CRLESEVLQL KEQLFDAERE IQRLAERVEG GSSNSPVSSS VSVEHNETSF FGDYKVEEDG DDYDNMVYPV
201: PENSYIDGEE WMNYQLNVIF
001: MNYTVDDQNM AFISQLYPDV YTQIVQPGEV KQPKRRRKKT KGSVASADGG NGLFRKRKLT DEQVNMLEMS FGDEHKLESE RKDRLAAELG LDPRQVAVWF
101: QNRRARWKNK RLEEEYNKLK NSHDNVVVDK CRLESEVIQL KEQLYDAERE IQRLAERVEG GSSNSPISSS VSVEANETPF FGDYKVGDDG DDYDHLFYPV
201: PENSYIDEAE WMSLYI
101: QNRRARWKNK RLEEEYNKLK NSHDNVVVDK CRLESEVIQL KEQLYDAERE IQRLAERVEG GSSNSPISSS VSVEANETPF FGDYKVGDDG DDYDHLFYPV
201: PENSYIDEAE WMSLYI
Arabidopsis Description
HB-5homeobox protein 40 [Source:TAIR;Acc:AT4G36740]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.