Factsheet for PGSC0003DMT400045832

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400045855	Potato	nucleus	73.71	80.28
Solyc03g034120.2.1	Tomato	nucleus	68.1	76.7
PGSC0003DMT400045834	Potato	nucleus	67.24	73.93
PGSC0003DMT400011464	Potato	nucleus	48.28	53.59
PGSC0003DMT400033036	Potato	nucleus	49.14	53.27
KRH28621	Soybean	nucleus	47.84	51.63
VIT_04s0023g01330.t01	Wine grape	nucleus	46.12	50.71
KRH76853	Soybean	nucleus	46.55	50.47
PGSC0003DMT400050373	Potato	nucleus	35.34	49.7
CDY67008	Canola	nucleus	34.05	47.88
CDX72601	Canola	nucleus	43.97	47.0
Bra017780.1-P	Field mustard	nucleus	43.53	46.54
CDX69241	Canola	nucleus	43.53	46.54
CDX75593	Canola	nucleus	43.1	46.08
GSMUA_Achr7P25990_001	Banana	nucleus	30.17	46.05
AT4G36740.2	Thale cress	nucleus	42.67	45.62
KRH69950	Soybean	nucleus	41.38	45.28
CDY24769	Canola	nucleus	42.24	44.55
CDY68376	Canola	nucleus	41.81	43.69
CDY35477	Canola	nucleus	41.38	43.64
CDY30312	Canola	nucleus	41.81	43.5
GSMUA_Achr1P22640_001	Banana	nucleus	34.05	43.41
Bra040941.1-P	Field mustard	nucleus	41.38	43.24
AT2G18550.1	Thale cress	nucleus	40.95	43.18
Bra028099.1-P	Field mustard	nucleus	40.09	42.27
AT5G66700.1	Thale cress	nucleus	40.09	40.79
CDY30761	Canola	nucleus	39.22	40.62
CDY57132	Canola	nucleus	39.22	40.44
CDY52162	Canola	nucleus	39.66	39.83
Bra031819.1-P	Field mustard	nucleus	39.66	39.83
Bra010573.1-P	Field mustard	nucleus	31.03	39.78
CDY70377	Canola	nucleus	38.36	39.73
Bra012093.1-P	Field mustard	nucleus	38.36	39.73
CDX81374	Canola	nucleus	37.93	39.29
Bra037154.1-P	Field mustard	nucleus	37.93	39.11
GSMUA_Achr4P07170_001	Banana	nucleus	33.19	38.31
GSMUA_Achr8P31170_001	Banana	nucleus	34.48	38.28
HORVU2Hr1G092300.1	Barley	nucleus	21.12	36.3
TraesCS2B01G405700.1	Wheat	nucleus	34.05	35.75
HORVU2Hr1G036680.2	Barley	nucleus	36.21	35.59
EER97443	Sorghum	nucleus	35.34	35.5
Os07t0581700-01	Rice	nucleus	36.64	35.42
Zm00001d021934_P001	Maize	nucleus	35.34	35.04
Zm00001d006687_P001	Maize	nucleus	33.19	34.68
TraesCS2D01G199200.1	Wheat	nucleus	34.91	34.03
TraesCS2B01G218800.1	Wheat	nucleus	34.91	34.03
TraesCS2A01G188500.1	Wheat	nucleus	34.91	34.03
Zm00001d048172_P001	Maize	nucleus	32.33	32.05
EER92693	Sorghum	nucleus	33.19	31.82
Os03t0198600-01	Rice	nucleus	32.76	31.8
Zm00001d028129_P002	Maize	nucleus, plastid	32.76	31.8
TraesCS2D01G385500.1	Wheat	nucleus	33.62	31.58
TraesCSU01G009800.1	Wheat	nucleus	32.76	31.15
HORVU2Hr1G092290.6	Barley	nucleus	31.03	30.9
HORVU4Hr1G070610.1	Barley	nucleus	30.17	30.57
TraesCS4B01G261600.1	Wheat	nucleus	30.6	30.47
TraesCS4D01G261600.1	Wheat	nucleus	30.17	29.91
TraesCS4A01G040600.1	Wheat	nucleus	28.88	29.0
GSMUA_Achr4P14070_001	Banana	plastid	35.34	27.99

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	UniProt:M1BI97
PFAM:PF00046	EnsemblPlantsGene:PGSC0003DMG400017775	PGSC:PGSC0003DMG400017775	EnsemblPlants:PGSC0003DMT400045832	PRINTS:PR00031	ScanProsite:PS00027
PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF281	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI000294973B
SEG:seg	:	:	:	:	:

Description

Homeobox-leucine zipper protein ATHB-40 [Source:PGSC_GENE;Acc:PGSC0003DMG400017775]

Coordinates

chr3:-:4472709..4481600

Molecular Weight (calculated)

27257.4 Da

IEP (calculated)

6.726

GRAVY (calculated)

-0.843

Length

232 amino acids

Sequence
(BLAST)

001: MSSREPDDPL DTPLIMIKDR IARSRYNLCH SLCPSGEHSV VSILCALEET VKPQRRRKKN KVEGRNNTSE VVMRKRKLLS EEQVSLLERS FGDEHKLETE
101: RKAKLASELG LDPHQVAVWF QNRRARWKNK KLEEEYSKLK TQHEDTIIEK YHLETEVLKM KEQLFEAEKK IERLLLEHKS DISSNNSPTS SIFSMEQPHF
201: NLGEFGMEGQ LMDDNMFFVA DYQSNYVTLW DN

Best Arabidopsis Sequence Match ( AT4G36740.2 )
(BLAST)

001: MNYTVDDQNM AFISQLYPDV YTQIVQPVGE VKQPKRRRKK TKGSVASADG GNGLFRKRKL TDEQVNMLEM SFGDEHKLES ERKDRLAAEL GLDPRQVAVW
101: FQNRRARWKN KRLEEEYNKL KNSHDNVVVD KCRLESEVIQ LKEQLYDAER EIQRLAERVE GGSSNSPISS SVSVEANETP FFGDYKVGDD GDDYDHLFYP
201: VPENSYIDEA EWMSLYI

Arabidopsis Description

HB-5homeobox protein 40 [Source:TAIR;Acc:AT4G36740]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.