Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70377 | Canola | nucleus | 100.0 | 100.0 |
| Bra037154.1-P | Field mustard | nucleus | 81.25 | 80.89 |
| Bra031819.1-P | Field mustard | nucleus | 74.55 | 72.29 |
| AT5G66700.1 | Thale cress | nucleus | 67.86 | 66.67 |
| PGSC0003DMT400033036 | Potato | nucleus | 46.88 | 49.07 |
| Solyc02g062960.2.1 | Tomato | nucleus | 44.2 | 48.29 |
| Solyc02g085630.2.1 | Tomato | nucleus | 45.54 | 48.11 |
| VIT_04s0023g01330.t01 | Wine grape | nucleus | 44.64 | 47.39 |
| PGSC0003DMT400011464 | Potato | nucleus | 44.2 | 47.37 |
| Bra017780.1-P | Field mustard | nucleus | 45.54 | 47.0 |
| KRH76853 | Soybean | nucleus | 44.2 | 46.26 |
| Solyc03g034120.2.1 | Tomato | nucleus | 42.41 | 46.12 |
| KRH28621 | Soybean | nucleus | 44.2 | 46.05 |
| Bra040941.1-P | Field mustard | nucleus | 44.64 | 45.05 |
| PGSC0003DMT400045834 | Potato | nucleus | 42.41 | 45.02 |
| GSMUA_Achr7P25990_001 | Banana | nucleus | 30.36 | 44.74 |
| Solyc03g034110.2.1 | Tomato | nucleus | 41.52 | 43.66 |
| GSMUA_Achr1P22640_001 | Banana | nucleus | 35.27 | 43.41 |
| PGSC0003DMT400045855 | Potato | nucleus | 41.07 | 43.19 |
| Solyc03g034130.2.1 | Tomato | nucleus | 41.96 | 41.96 |
| PGSC0003DMT400050373 | Potato | nucleus | 30.8 | 41.82 |
| Bra028099.1-P | Field mustard | nucleus | 41.07 | 41.82 |
| KRH69950 | Soybean | nucleus | 38.84 | 41.04 |
| Solyc03g034150.1.1 | Tomato | nucleus | 36.61 | 40.59 |
| HORVU2Hr1G092300.1 | Barley | nucleus | 23.66 | 39.26 |
| Bra010573.1-P | Field mustard | nucleus | 31.25 | 38.67 |
| PGSC0003DMT400045832 | Potato | nucleus | 39.73 | 38.36 |
| GSMUA_Achr4P07170_001 | Banana | nucleus | 33.04 | 36.82 |
| HORVU2Hr1G036680.2 | Barley | nucleus | 37.95 | 36.02 |
| EER97443 | Sorghum | nucleus | 37.05 | 35.93 |
| Zm00001d021934_P001 | Maize | nucleus | 37.05 | 35.47 |
| GSMUA_Achr8P31170_001 | Banana | nucleus | 33.04 | 35.41 |
| Zm00001d006687_P001 | Maize | nucleus | 34.82 | 35.14 |
| TraesCS2D01G199200.1 | Wheat | nucleus | 37.05 | 34.87 |
| TraesCS2B01G218800.1 | Wheat | nucleus | 36.61 | 34.45 |
| TraesCS2A01G188500.1 | Wheat | nucleus | 36.61 | 34.45 |
| Os07t0581700-01 | Rice | nucleus | 36.61 | 34.17 |
| TraesCS2B01G405700.1 | Wheat | nucleus | 33.48 | 33.94 |
| Os03t0198600-01 | Rice | nucleus | 35.71 | 33.47 |
| EER92693 | Sorghum | nucleus | 35.71 | 33.06 |
| HORVU4Hr1G070610.1 | Barley | nucleus | 33.48 | 32.75 |
| Zm00001d028129_P002 | Maize | nucleus, plastid | 34.38 | 32.22 |
| HORVU2Hr1G092290.6 | Barley | nucleus | 33.48 | 32.19 |
| TraesCS4B01G261600.1 | Wheat | nucleus | 33.48 | 32.19 |
| TraesCS4D01G261600.1 | Wheat | nucleus | 33.48 | 32.05 |
| TraesCS2D01G385500.1 | Wheat | nucleus | 35.27 | 31.98 |
| TraesCSU01G009800.1 | Wheat | nucleus | 34.82 | 31.97 |
| TraesCS4A01G040600.1 | Wheat | nucleus | 32.59 | 31.6 |
| Bra024665.1-P | Field mustard | nucleus | 25.89 | 31.18 |
| Zm00001d048172_P001 | Maize | nucleus | 32.14 | 30.77 |
| GSMUA_Achr4P14070_001 | Banana | plastid | 35.27 | 26.96 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | EnsemblPlantsGene:Bra012093 | EnsemblPlants:Bra012093.1 | EnsemblPlants:Bra012093.1-P | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS |
| InterPro:Homeobox_dom | InterPro:IPR001356 | UniProt:M4D6I4 | PFAM:PF00046 | PRINTS:PR00031 | ScanProsite:PS00027 |
| PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF281 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI0001BA7B19 |
| SEG:seg | : | : | : | : | : |
Description
AT5G66700 (E=4e-092) HB53, HB-8, ATHB53 | HB53; DNA binding / transcription factor
Coordinates
chrA07:-:10055498..10056944
Molecular Weight (calculated)
25731.3 Da
IEP (calculated)
7.566
GRAVY (calculated)
-0.834
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQNVLGTQV YPYTTQTHGQ CIIVNQIDGS SSGEGSKPVK RRRRRRSKGS SATSEDDMTA IGVMLRKRKL TDEQVNMLEF SFENEHKLES GRKEKIAAEL
101: GLDPRQVAVW FQNRRARWKN KKLEEEYAKL KSQHDTVVLG QCQLESQVLK LSEQLSEAQN EIRKLSERLA QETLTNSPSS PRSVEANGAP IHFEFPPDVN
201: YNIPFYISDN SYLQNMEYWD GLYV
101: GLDPRQVAVW FQNRRARWKN KKLEEEYAKL KSQHDTVVLG QCQLESQVLK LSEQLSEAQN EIRKLSERLA QETLTNSPSS PRSVEANGAP IHFEFPPDVN
201: YNIPFYISDN SYLQNMEYWD GLYV
001: MDHGRLMDDQ MMLGSQVYPY TTQPQNSHCI IVNQIDGGEE SKPVKRRRKR RSKGSSATNE EDVAEIGGML RKRKLTDEQV NMLEYSFGNE HKLESGRKEK
101: IAGELGLDPR QVAVWFQNRR ARWKNKKLEE EYAKLKNHHD NVVLGQCQLE SQILKLTEQL SEAQSEIRKL SERLEEMPTN SSSSSLSVEA NNAPTDFELA
201: PETNYNIPFY MLDNNYLQSM EYWDGLYV
101: IAGELGLDPR QVAVWFQNRR ARWKNKKLEE EYAKLKNHHD NVVLGQCQLE SQILKLTEQL SEAQSEIRKL SERLEEMPTN SSSSSLSVEA NNAPTDFELA
201: PETNYNIPFY MLDNNYLQSM EYWDGLYV
Arabidopsis Description
ATHB-53Homeobox-leucine zipper protein ATHB-53 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVR0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.