Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G199200.1 | Wheat | nucleus | 93.28 | 93.28 |
| HORVU2Hr1G036680.2 | Barley | nucleus | 89.92 | 90.68 |
| TraesCS2B01G218800.1 | Wheat | nucleus | 89.92 | 89.92 |
| Os07t0581700-01 | Rice | nucleus | 70.17 | 69.58 |
| EER97443 | Sorghum | nucleus | 65.55 | 67.53 |
| Zm00001d021934_P001 | Maize | nucleus | 65.55 | 66.67 |
| Zm00001d006687_P001 | Maize | nucleus | 60.92 | 65.32 |
| GSMUA_Achr7P25990_001 | Banana | nucleus | 34.45 | 53.95 |
| GSMUA_Achr4P07170_001 | Banana | nucleus | 42.86 | 50.75 |
| GSMUA_Achr1P22640_001 | Banana | nucleus | 37.4 | 48.9 |
| GSMUA_Achr8P31170_001 | Banana | nucleus | 38.24 | 43.54 |
| CDY67008 | Canola | nucleus | 29.83 | 43.03 |
| TraesCS4A01G040600.1 | Wheat | nucleus | 41.6 | 42.86 |
| PGSC0003DMT400033036 | Potato | nucleus | 37.4 | 41.59 |
| VIT_04s0023g01330.t01 | Wine grape | nucleus | 36.55 | 41.23 |
| Solyc02g085630.2.1 | Tomato | nucleus | 36.55 | 41.04 |
| PGSC0003DMT400011464 | Potato | nucleus | 35.71 | 40.67 |
| Solyc02g062960.2.1 | Tomato | nucleus | 34.87 | 40.49 |
| KRH28621 | Soybean | nucleus | 36.55 | 40.47 |
| CDX69241 | Canola | nucleus | 36.55 | 40.09 |
| CDX75593 | Canola | nucleus | 36.55 | 40.09 |
| Bra040941.1-P | Field mustard | nucleus | 37.4 | 40.09 |
| CDY68376 | Canola | nucleus | 37.4 | 40.09 |
| CDY30312 | Canola | nucleus | 37.4 | 39.91 |
| AT4G36740.2 | Thale cress | nucleus | 36.13 | 39.63 |
| KRH76853 | Soybean | nucleus | 35.29 | 39.25 |
| KRH69950 | Soybean | nucleus | 34.87 | 39.15 |
| Bra028099.1-P | Field mustard | nucleus | 36.13 | 39.09 |
| PGSC0003DMT400045834 | Potato | nucleus | 34.45 | 38.86 |
| Solyc03g034120.2.1 | Tomato | nucleus | 33.61 | 38.84 |
| CDX72601 | Canola | nucleus | 34.45 | 37.79 |
| Solyc03g034110.2.1 | Tomato | nucleus | 33.61 | 37.56 |
| CDX81374 | Canola | nucleus | 35.29 | 37.5 |
| Bra017780.1-P | Field mustard | nucleus | 34.03 | 37.33 |
| CDY24769 | Canola | nucleus | 34.45 | 37.27 |
| CDY35477 | Canola | nucleus | 34.03 | 36.82 |
| PGSC0003DMT400045855 | Potato | nucleus | 32.77 | 36.62 |
| Solyc03g034130.2.1 | Tomato | nucleus | 34.45 | 36.61 |
| Bra012093.1-P | Field mustard | nucleus | 34.45 | 36.61 |
| CDY70377 | Canola | nucleus | 34.45 | 36.61 |
| CDY30761 | Canola | nucleus | 34.03 | 36.16 |
| PGSC0003DMT400050373 | Potato | nucleus | 24.79 | 35.76 |
| AT2G18550.1 | Thale cress | nucleus | 32.77 | 35.45 |
| AT5G66700.1 | Thale cress | nucleus | 33.61 | 35.09 |
| PGSC0003DMT400045832 | Potato | nucleus | 34.03 | 34.91 |
| Solyc03g034150.1.1 | Tomato | nucleus | 28.99 | 34.16 |
| GSMUA_Achr4P14070_001 | Banana | plastid | 41.6 | 33.79 |
| CDY57132 | Canola | nucleus | 31.93 | 33.78 |
| Bra031819.1-P | Field mustard | nucleus | 32.77 | 33.77 |
| CDY52162 | Canola | nucleus | 32.77 | 33.77 |
| Bra037154.1-P | Field mustard | nucleus | 31.51 | 33.33 |
| Bra010573.1-P | Field mustard | nucleus | 25.21 | 33.15 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom |
| InterPro:IPR001356 | PFAM:PF00046 | PRINTS:PR00031 | ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 |
| PANTHER:PTHR24326:SF281 | SMART:SM00389 | SUPFAM:SSF46689 | EnsemblPlantsGene:TraesCS2A01G188500 | EnsemblPlants:TraesCS2A01G188500.1 | TIGR:cd00086 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr2A:+:153452292..153453239
Molecular Weight (calculated)
25787.2 Da
IEP (calculated)
7.600
GRAVY (calculated)
-0.682
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKQQVFGSS YVDMPFFAAN GAATAQGESR PRARRRRRRA ARCGGGDGDG GDMDGGGDPK KRRLTDEQVH GLELSFREER KLETGRKVHL AAELGLDPKQ
101: VAVWFQNRRA RHKSKLMEEE FAKLKHAHDA AILHKCHLEN ELLRLKERLG ATEEEVRRLR SAAGSHGASG NGGDAADAVG ACGGSPSSSF STGTCQQHPG
201: FSGAGQLGPD DELMMCVPEY GGYADSSVVE WFSLYGLI
101: VAVWFQNRRA RHKSKLMEEE FAKLKHAHDA AILHKCHLEN ELLRLKERLG ATEEEVRRLR SAAGSHGASG NGGDAADAVG ACGGSPSSSF STGTCQQHPG
201: FSGAGQLGPD DELMMCVPEY GGYADSSVVE WFSLYGLI
001: MNYTVDDQNM AFISQLYPDV YTQIVQPVGE VKQPKRRRKK TKGSVASADG GNGLFRKRKL TDEQVNMLEM SFGDEHKLES ERKDRLAAEL GLDPRQVAVW
101: FQNRRARWKN KRLEEEYNKL KNSHDNVVVD KCRLESEVIQ LKEQLYDAER EIQRLAERVE GGSSNSPISS SVSVEANETP FFGDYKVGDD GDDYDHLFYP
201: VPENSYIDEA EWMSLYI
101: FQNRRARWKN KRLEEEYNKL KNSHDNVVVD KCRLESEVIQ LKEQLYDAER EIQRLAERVE GGSSNSPISS SVSVEANETP FFGDYKVGDD GDDYDHLFYP
201: VPENSYIDEA EWMSLYI
Arabidopsis Description
HB-5homeobox protein 40 [Source:TAIR;Acc:AT4G36740]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.