Skip to main content
crop-pal logo
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • plastid 3
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra040941.1-P Field mustard nucleus 97.76 98.2
CDY68376 Canola nucleus 95.96 96.4
AT2G18550.1 Thale cress nucleus 76.23 77.27
CDX75593 Canola nucleus 70.4 72.35
CDX72601 Canola nucleus 69.51 71.43
CDX69241 Canola nucleus 69.06 70.97
CDY35477 Canola nucleus 66.37 67.27
CDY24769 Canola nucleus 63.23 64.09
Solyc02g085630.2.1 Tomato nucleus 56.05 58.96
VIT_04s0023g01330.t01 Wine grape nucleus 55.61 58.77
PGSC0003DMT400011464 Potato nucleus 52.47 55.98
Solyc02g062960.2.1 Tomato nucleus 51.12 55.61
PGSC0003DMT400033036 Potato nucleus 53.36 55.61
KRH28621 Soybean nucleus 52.91 54.88
KRH76853 Soybean nucleus 52.47 54.67
PGSC0003DMT400045834 Potato nucleus 47.53 50.24
Solyc03g034120.2.1 Tomato nucleus 46.19 50.0
CDY67008 Canola nucleus 36.32 49.09
KRH69950 Soybean nucleus 46.19 48.58
GSMUA_Achr1P22640_001 Banana nucleus 39.46 48.35
Solyc03g034150.1.1 Tomato nucleus 43.5 48.02
PGSC0003DMT400050373 Potato nucleus 34.98 47.27
Solyc03g034110.2.1 Tomato nucleus 44.39 46.48
GSMUA_Achr7P25990_001 Banana nucleus 31.39 46.05
PGSC0003DMT400045855 Potato nucleus 43.5 45.54
Solyc03g034130.2.1 Tomato nucleus 45.74 45.54
CDY70377 Canola nucleus 44.84 44.64
CDY30761 Canola nucleus 44.84 44.64
CDY57132 Canola nucleus 43.5 43.11
CDX81374 Canola nucleus 43.05 42.86
PGSC0003DMT400045832 Potato nucleus 43.5 41.81
CDY52162 Canola nucleus 43.05 41.56
GSMUA_Achr8P31170_001 Banana nucleus 38.56 41.15
TraesCS2B01G405700.1 Wheat nucleus 40.36 40.72
GSMUA_Achr4P07170_001 Banana nucleus 34.98 38.81
HORVU2Hr1G036680.2 Barley nucleus 40.36 38.14
Os07t0581700-01 Rice nucleus 40.81 37.92
TraesCS2D01G199200.1 Wheat nucleus 40.36 37.82
EER97443 Sorghum nucleus 39.01 37.66
Zm00001d021934_P001 Maize nucleus 39.46 37.61
TraesCS2A01G188500.1 Wheat nucleus 39.91 37.4
TraesCS2B01G218800.1 Wheat nucleus 39.91 37.4
Zm00001d006687_P001 Maize nucleus 37.22 37.39
Os03t0198600-01 Rice nucleus 39.46 36.82
HORVU2Hr1G092300.1 Barley nucleus 21.97 36.3
TraesCS2D01G385500.1 Wheat nucleus 39.46 35.63
TraesCSU01G009800.1 Wheat nucleus 38.56 35.25
EER92693 Sorghum nucleus 38.12 35.12
Zm00001d028129_P002 Maize nucleus, plastid 37.22 34.73
TraesCS4A01G040600.1 Wheat nucleus 35.43 34.2
HORVU4Hr1G070610.1 Barley nucleus 34.98 34.06
TraesCS4B01G261600.1 Wheat nucleus 35.43 33.91
TraesCS4D01G261600.1 Wheat nucleus 35.43 33.76
Zm00001d048172_P001 Maize nucleus 34.53 32.91
HORVU2Hr1G092290.6 Barley nucleus 33.63 32.19
GSMUA_Achr4P14070_001 Banana plastid 40.36 30.72
CDY16214 Canola nucleus 25.11 24.45
Protein Annotations
Gene3D:1.10.10.60MapMan:15.5.3.1GO:A0A078GYH4UniProt:A0A078GYH4EnsemblPlants:CDY30312ProteinID:CDY30312
ProteinID:CDY30312.1ncoils:CoilGO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006355
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0043565EnsemblPlantsGene:GSBRNA2T00044984001
InterPro:HTH_motifInterPro:Homeobox-like_sfInterPro:Homeobox_CSInterPro:Homeobox_domInterPro:IPR001356PFAM:PF00046
PRINTS:PR00031ScanProsite:PS00027PFscan:PS50071PANTHER:PTHR24326PANTHER:PTHR24326:SF281SMART:SM00389
SUPFAM:SSF46689UniParc:UPI0004EF38C2SEG:seg:::
Description
BnaA09g09650DBnaA09g09650D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GYH4]
Coordinates
chrLK032252:+:158375..160198
Molecular Weight (calculated)
25756.2 Da
IEP (calculated)
6.065
GRAVY (calculated)
-0.833
Length
223 amino acids
Sequence
(BLAST)
001: MNNQNVDDHN LLFISQMYPS VYTASIPQQA GESKPARPRR RRKSKSVAVA EVGGEGGNGW FRKRKLSDEQ VRMLEMSFGD EHKLESERKD RLAKELGLDP
101: RQVAVWFQNR RARWKNKRLE DEYTRLKNAH ENVVVEKCRL DSEVLHLKEQ LHDAEREIQR LALKVEGVLS NSPISSSVSV EANQTTPFFG DYEVEVGDDG
201: GGYENLFYSP EYIDGFEWMS PFM
Best Arabidopsis Sequence Match ( AT2G18550.1 )
(BLAST)
001: MNNQNVDDHN LLLISQLYPN VYTPLVPQQG GEAKPTRRRK RKSKSVVVAE EGENEGNGWF RKRKLSDEQV RMLEISFEDD HKLESERKDR LASELGLDPR
101: QVAVWFQNRR ARWKNKRVED EYTKLKNAYE TTVVEKCRLD SEVIHLKEQL YEAEREIQRL AKRVEGTLSN SPISSSVTIE ANHTTPFFGD YDIGFDGEAD
201: ENLLYSPDYI DGLDWMSQFM
Arabidopsis Description
ATHB-21Homeobox-leucine zipper protein ATHB-21 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU70]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.