CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024665.1-P	Field mustard	nucleus	66.38	81.72
AT1G27045.4	Thale cress	nucleus	57.21	51.98
CDY67008	Canola	nucleus	23.58	32.73
CDX75593	Canola	nucleus	25.76	27.19
CDY35477	Canola	nucleus	25.76	26.82
CDX69241	Canola	nucleus	25.33	26.73
CDY24769	Canola	nucleus	25.33	26.36
CDX81374	Canola	nucleus	24.89	25.45
CDY70377	Canola	nucleus	24.89	25.45
CDY57132	Canola	nucleus	24.89	25.33
CDY68376	Canola	nucleus	24.45	25.23
CDY30312	Canola	nucleus	24.45	25.11
CDY52162	Canola	nucleus	25.33	25.11
CDY30761	Canola	nucleus	24.45	25.0
CDX72601	Canola	nucleus	23.58	24.88

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	GO:A0A078FTF5	UniProt:A0A078FTF5	EnsemblPlants:CDY16214	ProteinID:CDY16214
ProteinID:CDY16214.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
EnsemblPlantsGene:GSBRNA2T00090670001	InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356
InterPro:Leu_zip_homeo	PFAM:PF00046	PFAM:PF02183	PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071
PANTHER:PTHR24326	PANTHER:PTHR24326:SF136	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI0004EF1876	SEG:seg

Description

BnaA09g29480DHomeobox-leucine zipper protein ATHB-54 [Source:Projected from Arabidopsis thaliana (AT1G27045) UniProtKB/Swiss-Prot;Acc:P0CJ65]

Coordinates

chrLK032061:+:560510..561559

Molecular Weight (calculated)

26386.7 Da

IEP (calculated)

4.626

GRAVY (calculated)

-0.842

Length

229 amino acids

Sequence
(BLAST)

001: MENSNIDSEV FSWFQNQNQN HCLKFHSSCF PPTSQSALYG SSSMSNTETN TVDEEDVCES NKMRETTKKR KLTPIQLCLL EESFEEDKRL EPDRKLWLAE
101: KLGLQPTQVA VWFQNRRARF KTRQLELDCD SLKASYAKLK TDRDILFRQN QALENKVALL KEKLQFQEKL ETQSMEAEKL GEEGSSVKSD NTQYTEEEEG
201: LGSNQYSFPE LAALGFYYDP TMSASNLGL

Best Arabidopsis Sequence Match ( AT1G27045.1 )
(BLAST)

001: MENSDTDSEV FFWFQNQNQN HSHKFPSSCF PPSSHSAFYG SSSMINTETA TMDEEDVCES YMMREITKKR KLTPIQLRLL EESFEEEKRL EPDRKLWLAE
101: KLGLQPSQVA VWFQNRRARY KTKQLEHDCD SLKASYAKLK TDWDILFVQN QTLKSKVDLL KEKLKMQENL ETQSIERKRL GEEGSSVKSD NTQYSEEEGL
201: ENQYSFPELA VLGFYYDPTL TASNLRL

Arabidopsis Description

Homeobox-leucine zipper protein family [Source:TAIR;Acc:AT1G27045]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.