CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037154.1-P	Field mustard	nucleus	96.44	96.44
CDX81374	Canola	nucleus	83.11	83.48
CDY30761	Canola	nucleus	80.89	81.25
CDY70377	Canola	nucleus	80.0	80.36
CDY52162	Canola	nucleus	77.33	75.32
CDY67008	Canola	nucleus	52.89	72.12
AT5G66700.1	Thale cress	nucleus	72.89	71.93
Solyc02g062960.2.1	Tomato	nucleus	45.33	49.76
Solyc02g085630.2.1	Tomato	nucleus	46.67	49.53
CDX69241	Canola	nucleus	47.11	48.85
CDX75593	Canola	nucleus	46.22	47.93
PGSC0003DMT400011464	Potato	nucleus	44.44	47.85
KRH76853	Soybean	nucleus	44.89	47.2
PGSC0003DMT400033036	Potato	nucleus	44.44	46.73
KRH28621	Soybean	nucleus	44.44	46.51
PGSC0003DMT400045834	Potato	nucleus	43.56	46.45
Solyc03g034120.2.1	Tomato	nucleus	42.22	46.12
VIT_04s0023g01330.t01	Wine grape	nucleus	43.11	45.97
CDX72601	Canola	nucleus	44.0	45.62
PGSC0003DMT400045855	Potato	nucleus	42.67	45.07
CDY35477	Canola	nucleus	43.11	44.09
CDY24769	Canola	nucleus	43.11	44.09
GSMUA_Achr7P25990_001	Banana	nucleus	29.78	44.08
CDY68376	Canola	nucleus	43.11	43.69
Solyc03g034110.2.1	Tomato	nucleus	41.33	43.66
CDY30312	Canola	nucleus	43.11	43.5
Solyc03g034130.2.1	Tomato	nucleus	43.11	43.3
KRH69950	Soybean	nucleus	39.11	41.51
GSMUA_Achr1P22640_001	Banana	nucleus	32.0	39.56
PGSC0003DMT400050373	Potato	nucleus	28.89	39.39
PGSC0003DMT400045832	Potato	nucleus	40.44	39.22
Solyc03g034150.1.1	Tomato	nucleus	34.67	38.61
HORVU2Hr1G092300.1	Barley	nucleus	22.22	37.04
EER97443	Sorghum	nucleus	35.11	34.2
Zm00001d006687_P001	Maize	nucleus	33.33	33.78
HORVU2Hr1G036680.2	Barley	nucleus	35.11	33.47
Zm00001d021934_P001	Maize	nucleus	34.67	33.33
GSMUA_Achr8P31170_001	Banana	nucleus	30.67	33.01
TraesCS2B01G405700.1	Wheat	nucleus	32.0	32.58
TraesCS2B01G218800.1	Wheat	nucleus	34.22	32.35
TraesCS2D01G199200.1	Wheat	nucleus	34.22	32.35
Os07t0581700-01	Rice	nucleus	34.22	32.08
TraesCS2A01G188500.1	Wheat	nucleus	33.78	31.93
GSMUA_Achr4P07170_001	Banana	nucleus	28.44	31.84
Os03t0198600-01	Rice	nucleus	33.78	31.8
HORVU4Hr1G070610.1	Barley	nucleus	31.56	31.0
TraesCS4B01G261600.1	Wheat	nucleus	32.0	30.9
TraesCSU01G009800.1	Wheat	nucleus	33.33	30.74
EER92693	Sorghum	nucleus	32.89	30.58
Zm00001d028129_P002	Maize	nucleus, plastid	32.44	30.54
TraesCS2D01G385500.1	Wheat	nucleus	33.33	30.36
TraesCS4D01G261600.1	Wheat	nucleus	31.56	30.34
HORVU2Hr1G092290.6	Barley	nucleus	31.11	30.04
TraesCS4A01G040600.1	Wheat	nucleus	30.67	29.87
Zm00001d048172_P001	Maize	nucleus	30.22	29.06
GSMUA_Achr4P14070_001	Banana	plastid	35.11	26.96
CDY16214	Canola	nucleus	25.33	24.89

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	GO:A0A078J447	UniProt:A0A078J447	EnsemblPlants:CDY57132	ProteinID:CDY57132
ProteinID:CDY57132.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:GSBRNA2T00020577001
InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	PFAM:PF00046
PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF281	SMART:SM00389
SUPFAM:SSF46689	UniParc:UPI0004EEE034	SEG:seg	:	:	:

Description

BnaA09g52670DBnaA09g52670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J447]

Coordinates

chrLK033548:-:47463..48803

Molecular Weight (calculated)

26009.6 Da

IEP (calculated)

6.152

GRAVY (calculated)

-0.810

Length

225 amino acids

Sequence
(BLAST)

001: MDQMVLGSQV YPYTTQTHSQ CIIVNQIDGA PSGDGSKPVK RRRKRRSKGS SATNEDDVAT IGAMLRKRKL TDEQMNMLEY SFENEHKLES GRKEKIAREL
101: GLDPRQVAVW FQNRRARWKN KKLEEEYAKL KSQHDTVLLG QSHLESQVLI LTEQLTEAQN EIQKLSERLV QETSTNSSSS SLSVEANYAP IEFEFAPVDT
201: NYNIPFYMMD NNYLQNMEYW DGLYV

Best Arabidopsis Sequence Match ( AT5G66700.1 )
(BLAST)

001: MDHGRLMDDQ MMLGSQVYPY TTQPQNSHCI IVNQIDGGEE SKPVKRRRKR RSKGSSATNE EDVAEIGGML RKRKLTDEQV NMLEYSFGNE HKLESGRKEK
101: IAGELGLDPR QVAVWFQNRR ARWKNKKLEE EYAKLKNHHD NVVLGQCQLE SQILKLTEQL SEAQSEIRKL SERLEEMPTN SSSSSLSVEA NNAPTDFELA
201: PETNYNIPFY MLDNNYLQSM EYWDGLYV

Arabidopsis Description

ATHB-53Homeobox-leucine zipper protein ATHB-53 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVR0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.