Factsheet for Solyc03g034120.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g034110.2.1	Tomato	nucleus	82.04	79.34
Solyc03g034130.2.1	Tomato	nucleus	81.07	74.55
PGSC0003DMT400045832	Potato	nucleus	76.7	68.1
Solyc02g085630.2.1	Tomato	nucleus	58.74	57.08
Solyc02g062960.2.1	Tomato	nucleus	55.83	56.1
Solyc03g034150.1.1	Tomato	nucleus	52.91	53.96
KRH28621	Soybean	nucleus	55.34	53.02
KRH76853	Soybean	nucleus	54.37	52.34
VIT_04s0023g01330.t01	Wine grape	nucleus	53.4	52.13
CDX75593	Canola	nucleus	51.94	49.31
CDX69241	Canola	nucleus	51.46	48.85
CDX72601	Canola	nucleus	51.46	48.85
AT4G36740.2	Thale cress	nucleus	50.49	47.93
Bra017780.1-P	Field mustard	nucleus	50.0	47.47
CDY24769	Canola	nucleus	50.49	47.27
AT2G18550.1	Thale cress	nucleus	50.49	47.27
CDY67008	Canola	nucleus	37.86	47.27
Bra040941.1-P	Field mustard	nucleus	50.49	46.85
CDY68376	Canola	nucleus	50.0	46.4
CDY30312	Canola	nucleus	50.0	46.19
CDY35477	Canola	nucleus	49.03	45.91
KRH69950	Soybean	nucleus	47.09	45.75
Bra028099.1-P	Field mustard	nucleus	47.09	44.09
GSMUA_Achr7P25990_001	Banana	nucleus	32.52	44.08
GSMUA_Achr1P22640_001	Banana	nucleus	37.86	42.86
Bra010573.1-P	Field mustard	nucleus	37.38	42.54
CDY70377	Canola	nucleus	46.12	42.41
Bra012093.1-P	Field mustard	nucleus	46.12	42.41
CDY57132	Canola	nucleus	46.12	42.22
AT5G66700.1	Thale cress	nucleus	46.6	42.11
Bra031819.1-P	Field mustard	nucleus	47.09	41.99
CDX81374	Canola	nucleus	45.63	41.96
CDY52162	Canola	nucleus	46.6	41.56
CDY30761	Canola	nucleus	45.15	41.52
Bra037154.1-P	Field mustard	nucleus	45.15	41.33
GSMUA_Achr8P31170_001	Banana	nucleus	38.84	38.28
GSMUA_Achr4P07170_001	Banana	nucleus	36.41	37.31
TraesCS2B01G405700.1	Wheat	nucleus	38.35	35.75
HORVU2Hr1G036680.2	Barley	nucleus	40.78	35.59
Os07t0581700-01	Rice	nucleus	40.78	35.0
EER97443	Sorghum	nucleus	38.35	34.2
Zm00001d006687_P001	Maize	nucleus	36.41	33.78
TraesCS2A01G188500.1	Wheat	nucleus	38.84	33.61
TraesCS2B01G218800.1	Wheat	nucleus	38.84	33.61
TraesCS2D01G199200.1	Wheat	nucleus	38.84	33.61
HORVU2Hr1G092300.1	Barley	nucleus	21.84	33.33
Zm00001d021934_P001	Maize	nucleus	37.86	33.33
TraesCS2D01G385500.1	Wheat	nucleus	37.86	31.58
TraesCSU01G009800.1	Wheat	nucleus	37.38	31.56
HORVU2Hr1G092290.6	Barley	nucleus	33.98	30.04
HORVU4Hr1G070610.1	Barley	nucleus	33.01	29.69
Os03t0198600-01	Rice	nucleus	33.98	29.29
TraesCS4B01G261600.1	Wheat	nucleus	33.01	29.18
TraesCS4D01G261600.1	Wheat	nucleus	33.01	29.06
TraesCS4A01G040600.1	Wheat	nucleus	32.52	29.0
EER92693	Sorghum	nucleus	33.5	28.51
Zm00001d048172_P001	Maize	nucleus	32.04	28.21
Zm00001d028129_P002	Maize	nucleus, plastid	32.52	28.03
GSMUA_Achr4P14070_001	Banana	plastid	38.35	26.96

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	UniProt:K4BFT4
PFAM:PF00046	PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF281
SMART:SM00389	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc03g034120.2	EnsemblPlants:Solyc03g034120.2.1	UniParc:UPI0002767D83	SEG:seg

Description

No Description!

Coordinates

chr3:-:5819667..5821780

Molecular Weight (calculated)

24459.3 Da

IEP (calculated)

6.645

GRAVY (calculated)

-0.890

Length

206 amino acids

Sequence
(BLAST)

001: MTSSKVDDQM ELISHFYPHI YAQLAQQQGE TVKPRRRRKK NEIEGRNNTS EVVMKKRKLL SEEQVNLLER SFGDEHKLEM ERKAKLASEL GLDPHQVAVW
101: FQNKRARWKN KKLEEEYSKL KTQHELTIIE KYRLESEVLK MKEQLFEAQK EIERLLLEHK SDISSNNSPT SSIFSMEQPH FDLGELILEG QLMDDNMLFN
201: ITLWDN

Best Arabidopsis Sequence Match ( AT4G36740.2 )
(BLAST)

001: MNYTVDDQNM AFISQLYPDV YTQIVQPVGE VKQPKRRRKK TKGSVASADG GNGLFRKRKL TDEQVNMLEM SFGDEHKLES ERKDRLAAEL GLDPRQVAVW
101: FQNRRARWKN KRLEEEYNKL KNSHDNVVVD KCRLESEVIQ LKEQLYDAER EIQRLAERVE GGSSNSPISS SVSVEANETP FFGDYKVGDD GDDYDHLFYP
201: VPENSYIDEA EWMSLYI

Arabidopsis Description

HB-5homeobox protein 40 [Source:TAIR;Acc:AT4G36740]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.