Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
22065420
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER92693 | Sorghum | nucleus | 84.52 | 83.47 |
| Os03t0198600-01 | Rice | nucleus | 70.29 | 70.29 |
| Zm00001d048172_P001 | Maize | nucleus | 67.36 | 68.8 |
| TraesCS4D01G261600.1 | Wheat | nucleus | 66.95 | 68.38 |
| TraesCS4B01G261600.1 | Wheat | nucleus | 61.92 | 63.52 |
| TraesCS4A01G040600.1 | Wheat | nucleus | 60.25 | 62.34 |
| HORVU4Hr1G070610.1 | Barley | nucleus | 59.0 | 61.57 |
| GSMUA_Achr7P25990_001 | Banana | nucleus | 32.22 | 50.66 |
| GSMUA_Achr1P22640_001 | Banana | nucleus | 37.66 | 49.45 |
| Zm00001d006687_P001 | Maize | nucleus | 44.77 | 48.2 |
| Zm00001d021934_P001 | Maize | nucleus | 45.61 | 46.58 |
| GSMUA_Achr4P07170_001 | Banana | nucleus | 36.82 | 43.78 |
| CDY67008 | Canola | nucleus | 29.71 | 43.03 |
| VIT_04s0023g01330.t01 | Wine grape | nucleus | 35.56 | 40.28 |
| KRH76853 | Soybean | nucleus | 35.56 | 39.72 |
| KRH28621 | Soybean | nucleus | 35.56 | 39.53 |
| GSMUA_Achr8P31170_001 | Banana | nucleus | 34.31 | 39.23 |
| PGSC0003DMT400033036 | Potato | nucleus | 34.31 | 38.32 |
| Solyc02g085630.2.1 | Tomato | nucleus | 33.89 | 38.21 |
| PGSC0003DMT400050373 | Potato | nucleus | 26.36 | 38.18 |
| Bra028099.1-P | Field mustard | nucleus | 34.73 | 37.73 |
| Bra040941.1-P | Field mustard | nucleus | 34.73 | 37.39 |
| KRH69950 | Soybean | nucleus | 33.05 | 37.26 |
| CDY30312 | Canola | nucleus | 34.73 | 37.22 |
| CDY68376 | Canola | nucleus | 34.31 | 36.94 |
| CDX75593 | Canola | nucleus | 33.47 | 36.87 |
| CDX69241 | Canola | nucleus | 32.64 | 35.94 |
| Solyc02g062960.2.1 | Tomato | nucleus | 30.54 | 35.61 |
| CDX72601 | Canola | nucleus | 32.22 | 35.48 |
| AT4G36740.2 | Thale cress | nucleus | 31.8 | 35.02 |
| AT2G18550.1 | Thale cress | nucleus | 32.22 | 35.0 |
| PGSC0003DMT400011464 | Potato | nucleus | 30.54 | 34.93 |
| PGSC0003DMT400045834 | Potato | nucleus | 30.54 | 34.6 |
| CDY24769 | Canola | nucleus | 31.8 | 34.55 |
| CDY35477 | Canola | nucleus | 31.8 | 34.55 |
| CDY70377 | Canola | nucleus | 32.22 | 34.38 |
| Bra012093.1-P | Field mustard | nucleus | 32.22 | 34.38 |
| CDY30761 | Canola | nucleus | 32.22 | 34.38 |
| Bra017780.1-P | Field mustard | nucleus | 30.96 | 34.1 |
| CDX81374 | Canola | nucleus | 31.8 | 33.93 |
| Solyc03g034110.2.1 | Tomato | nucleus | 29.71 | 33.33 |
| AT5G66700.1 | Thale cress | nucleus | 31.38 | 32.89 |
| PGSC0003DMT400045855 | Potato | nucleus | 29.29 | 32.86 |
| PGSC0003DMT400045832 | Potato | nucleus | 31.8 | 32.76 |
| Solyc03g034120.2.1 | Tomato | nucleus | 28.03 | 32.52 |
| CDY52162 | Canola | nucleus | 31.38 | 32.47 |
| Bra031819.1-P | Field mustard | nucleus | 31.38 | 32.47 |
| CDY57132 | Canola | nucleus | 30.54 | 32.44 |
| Solyc03g034130.2.1 | Tomato | nucleus | 30.13 | 32.14 |
| Bra037154.1-P | Field mustard | nucleus | 30.13 | 32.0 |
| Solyc03g034150.1.1 | Tomato | nucleus | 26.36 | 31.19 |
| GSMUA_Achr4P14070_001 | Banana | plastid | 37.66 | 30.72 |
| Bra010573.1-P | Field mustard | nucleus | 22.18 | 29.28 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:100274482 | MapMan:15.5.3.1 | UniProt:B4G1C5 | EMBL:BT043163 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS |
| InterPro:Homeobox_dom | InterPro:IPR001356 | ProteinID:ONL94799.1 | PFAM:PF00046 | PRINTS:PR00031 | ScanProsite:PS00027 |
| PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF262 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI00017B8220 |
| EnsemblPlantsGene:Zm00001d028129 | EnsemblPlants:Zm00001d028129_P002 | EnsemblPlants:Zm00001d028129_T002 | SEG:seg | : | : |
Description
grassy tillers1 grassy tillers1
Coordinates
chr1:+:23625801..23627370
Molecular Weight (calculated)
26545.2 Da
IEP (calculated)
6.639
GRAVY (calculated)
-0.618
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCEEEERLL FPSFVFPESF AEAATPGSGG EQKKARQRRR RKPRPAEGGE GADEQARKRR LSDDQARFLE LSFRKERKLE TPRKVQLAAE LGLDAKQVAV
101: WFQNRRARHK SKLMEEEFSK LRAAHDAVVL HNCHLETELL KMKDRLAEVE EEKTKLVAAA AAAAGGAAGA GSSSPSSSSF STVTHHPAAA LQVGQFGVEP
201: EEAADLAYMT EYAYNSYMNM MDLAPAYFGG VVYDYDHFN
101: WFQNRRARHK SKLMEEEFSK LRAAHDAVVL HNCHLETELL KMKDRLAEVE EEKTKLVAAA AAAAGGAAGA GSSSPSSSSF STVTHHPAAA LQVGQFGVEP
201: EEAADLAYMT EYAYNSYMNM MDLAPAYFGG VVYDYDHFN
001: MNYTVDDQNM AFISQLYPDV YTQIVQPGEV KQPKRRRKKT KGSVASADGG NGLFRKRKLT DEQVNMLEMS FGDEHKLESE RKDRLAAELG LDPRQVAVWF
101: QNRRARWKNK RLEEEYNKLK NSHDNVVVDK CRLESEVIQL KEQLYDAERE IQRLAERVEG GSSNSPISSS VSVEANETPF FGDYKVGDDG DDYDHLFYPV
201: PENSYIDEAE WMSLYI
101: QNRRARWKNK RLEEEYNKLK NSHDNVVVDK CRLESEVIQL KEQLYDAERE IQRLAERVEG GSSNSPISSS VSVEANETPF FGDYKVGDDG DDYDHLFYPV
201: PENSYIDEAE WMSLYI
Arabidopsis Description
HB-5homeobox protein 40 [Source:TAIR;Acc:AT4G36740]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.