Factsheet for GSMUA_Achr4P14070_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P25990_001	Banana	nucleus	30.38	58.55
GSMUA_Achr1P22640_001	Banana	nucleus	34.13	54.95
GSMUA_Achr4P07170_001	Banana	nucleus	37.2	54.23
GSMUA_Achr8P31170_001	Banana	nucleus	36.52	51.2
CDY67008	Canola	nucleus	26.28	46.67
HORVU4Hr1G070610.1	Barley	nucleus	34.13	43.67
KRH76853	Soybean	nucleus	31.06	42.52
TraesCS2D01G199200.1	Wheat	nucleus	34.47	42.44
HORVU2Hr1G036680.2	Barley	nucleus	34.13	42.37
TraesCS4A01G040600.1	Wheat	nucleus	33.11	41.99
Zm00001d006687_P001	Maize	nucleus	31.74	41.89
KRH28621	Soybean	nucleus	30.72	41.86
TraesCS4B01G261600.1	Wheat	nucleus	33.11	41.63
TraesCS2A01G188500.1	Wheat	nucleus	33.79	41.6
PGSC0003DMT400033036	Potato	nucleus	30.38	41.59
Zm00001d021934_P001	Maize	nucleus	33.11	41.45
Os03t0198600-01	Rice	nucleus	33.79	41.42
Os07t0581700-01	Rice	nucleus	33.79	41.25
VIT_04s0023g01330.t01	Wine grape	nucleus	29.69	41.23
TraesCS2B01G218800.1	Wheat	nucleus	33.45	41.18
EER97443	Sorghum	nucleus	32.42	41.13
Bra040941.1-P	Field mustard	nucleus	31.06	40.99
Solyc02g062960.2.1	Tomato	nucleus	28.67	40.98
Bra028099.1-P	Field mustard	nucleus	30.72	40.91
CDY30312	Canola	nucleus	30.72	40.36
TraesCS4D01G261600.1	Wheat	nucleus	32.08	40.17
Solyc02g085630.2.1	Tomato	nucleus	29.01	40.09
CDX69241	Canola	nucleus	29.69	40.09
PGSC0003DMT400045834	Potato	nucleus	28.67	39.81
EER92693	Sorghum	nucleus	32.76	39.67
CDY68376	Canola	nucleus	30.03	39.64
AT4G36740.2	Thale cress	nucleus	29.35	39.63
CDX72601	Canola	nucleus	29.01	39.17
CDX75593	Canola	nucleus	29.01	39.17
CDY24769	Canola	nucleus	29.35	39.09
PGSC0003DMT400011464	Potato	nucleus	27.65	38.76
Solyc03g034120.2.1	Tomato	nucleus	26.96	38.35
Bra017780.1-P	Field mustard	nucleus	28.33	38.25
TraesCS2B01G405700.1	Wheat	nucleus	28.67	38.01
HORVU2Hr1G092300.1	Barley	nucleus	17.41	37.78
AT2G18550.1	Thale cress	nucleus	28.33	37.73
Zm00001d028129_P002	Maize	nucleus, plastid	30.72	37.66
CDY35477	Canola	nucleus	27.99	37.27
Zm00001d048172_P001	Maize	nucleus	29.69	37.18
PGSC0003DMT400050373	Potato	nucleus	20.82	36.97
KRH69950	Soybean	nucleus	26.62	36.79
Solyc03g034110.2.1	Tomato	nucleus	26.62	36.62
CDX81374	Canola	nucleus	27.65	36.16
PGSC0003DMT400045855	Potato	nucleus	26.28	36.15
Solyc03g034130.2.1	Tomato	nucleus	27.3	35.71
CDY30761	Canola	nucleus	27.3	35.71
TraesCS2D01G385500.1	Wheat	nucleus	30.03	35.63
AT5G66700.1	Thale cress	nucleus	27.65	35.53
PGSC0003DMT400045832	Potato	nucleus	27.99	35.34
Bra012093.1-P	Field mustard	nucleus	26.96	35.27
CDY70377	Canola	nucleus	26.96	35.27
Bra037154.1-P	Field mustard	nucleus	26.96	35.11
CDY57132	Canola	nucleus	26.96	35.11
Bra031819.1-P	Field mustard	nucleus	27.65	35.06
CDY52162	Canola	nucleus	27.65	35.06
TraesCSU01G009800.1	Wheat	nucleus	28.67	34.43
HORVU2Hr1G092290.6	Barley	nucleus	26.96	33.91
Solyc03g034150.1.1	Tomato	nucleus	23.21	33.66
Bra010573.1-P	Field mustard	nucleus	19.45	31.49

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
EnsemblPlantsGene:GSMUA_Achr4G14070_001	EnsemblPlants:GSMUA_Achr4P14070_001	EnsemblPlants:GSMUA_Achr4T14070_001	InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	UniProt:M0SNS2	PFAM:PF00046	PRINTS:PR00031	ScanProsite:PS00027
PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF281	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI0002964F22
SEG:seg	:	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G14070_001]

Coordinates

chr4:-:10493521..10494515

Molecular Weight (calculated)

33861.8 Da

IEP (calculated)

10.639

GRAVY (calculated)

-0.526

Length

293 amino acids

Sequence
(BLAST)

001: MATVNSINLA SPPRTPLPIF SHGIHAIVAN GRRAFESTTT HLPINKSRNF NRCMHRRVFL SLPTTPLVLQ EIRVSLFLRD SRQHERSFTL SIPTLVSNAS
101: RLVHHMTFPF LAKANVIFSV GDTRTRRRRL RRRKVKGDAK KRRLSDEQVR FLEMSFRDER KLASGRKAHI AAELGLDGKQ VAVWFQNRRA RHKNKQLEEA
201: YLKLKLEHEA VVVEKCHLEN EVLRLKEKLL EAEEEIRKLS WSVNGGNLGS SFSAVSQQPL HGEFGTEAEA ELTYMDEYDL YNYTMEWTNP YGI

Best Arabidopsis Sequence Match ( AT4G36740.2 )
(BLAST)

001: MNYTVDDQNM AFISQLYPDV YTQIVQPVGE VKQPKRRRKK TKGSVASADG GNGLFRKRKL TDEQVNMLEM SFGDEHKLES ERKDRLAAEL GLDPRQVAVW
101: FQNRRARWKN KRLEEEYNKL KNSHDNVVVD KCRLESEVIQ LKEQLYDAER EIQRLAERVE GGSSNSPISS SVSVEANETP FFGDYKVGDD GDDYDHLFYP
201: VPENSYIDEA EWMSLYI

Arabidopsis Description

HB-5homeobox protein 40 [Source:TAIR;Acc:AT4G36740]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.