Factsheet for Zm00001d021934_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER97443	Sorghum	nucleus	87.61	88.74
Zm00001d006687_P001	Maize	nucleus	80.77	85.14
Os07t0581700-01	Rice	nucleus	71.37	69.58
HORVU2Hr1G036680.2	Barley	nucleus	68.38	67.8
TraesCS2A01G188500.1	Wheat	nucleus	66.67	65.55
TraesCS2D01G199200.1	Wheat	nucleus	65.81	64.71
TraesCS2B01G218800.1	Wheat	nucleus	64.96	63.87
TraesCS2B01G405700.1	Wheat	nucleus	57.69	61.09
TraesCSU01G009800.1	Wheat	nucleus	58.97	56.56
TraesCS2D01G385500.1	Wheat	nucleus	58.55	55.47
GSMUA_Achr7P25990_001	Banana	nucleus	32.91	50.66
GSMUA_Achr1P22640_001	Banana	nucleus	37.61	48.35
HORVU2Hr1G092300.1	Barley	nucleus	27.78	48.15
HORVU2Hr1G092290.6	Barley	nucleus	47.86	48.07
GSMUA_Achr4P07170_001	Banana	nucleus	40.17	46.77
Zm00001d028129_P002	Maize	nucleus, plastid	46.58	45.61
CDY67008	Canola	nucleus	31.62	44.85
Zm00001d048172_P001	Maize	nucleus	44.02	44.02
AT4G36740.2	Thale cress	nucleus	40.17	43.32
GSMUA_Achr8P31170_001	Banana	nucleus	38.46	43.06
VIT_04s0023g01330.t01	Wine grape	nucleus	38.46	42.65
KRH28621	Soybean	nucleus	38.89	42.33
PGSC0003DMT400033036	Potato	nucleus	37.61	41.12
CDX69241	Canola	nucleus	38.03	41.01
CDY68376	Canola	nucleus	38.46	40.54
Solyc02g085630.2.1	Tomato	nucleus	36.32	40.09
Solyc02g062960.2.1	Tomato	nucleus	35.04	40.0
KRH76853	Soybean	nucleus	36.32	39.72
Bra040941.1-P	Field mustard	nucleus	37.61	39.64
CDX75593	Canola	nucleus	36.75	39.63
KRH69950	Soybean	nucleus	35.9	39.62
AT2G18550.1	Thale cress	nucleus	37.18	39.55
CDY30312	Canola	nucleus	37.61	39.46
PGSC0003DMT400011464	Potato	nucleus	35.04	39.23
CDX72601	Canola	nucleus	35.9	38.71
Bra028099.1-P	Field mustard	nucleus	36.32	38.64
Bra017780.1-P	Field mustard	nucleus	35.47	38.25
PGSC0003DMT400045855	Potato	nucleus	34.62	38.03
PGSC0003DMT400045834	Potato	nucleus	34.19	37.91
Solyc03g034120.2.1	Tomato	nucleus	33.33	37.86
CDY24769	Canola	nucleus	35.47	37.73
CDY35477	Canola	nucleus	35.47	37.73
Solyc03g034110.2.1	Tomato	nucleus	34.19	37.56
CDY70377	Canola	nucleus	35.47	37.05
Bra012093.1-P	Field mustard	nucleus	35.47	37.05
AT5G66700.1	Thale cress	nucleus	35.47	36.4
CDY30761	Canola	nucleus	34.62	36.16
Solyc03g034130.2.1	Tomato	nucleus	34.19	35.71
CDX81374	Canola	nucleus	34.19	35.71
CDY52162	Canola	nucleus	35.04	35.5
Bra031819.1-P	Field mustard	nucleus	35.04	35.5
PGSC0003DMT400045832	Potato	nucleus	35.04	35.34
CDY57132	Canola	nucleus	33.33	34.67
Bra037154.1-P	Field mustard	nucleus	32.91	34.22
PGSC0003DMT400050373	Potato	nucleus	23.93	33.94
GSMUA_Achr4P14070_001	Banana	plastid	41.45	33.11
Solyc03g034150.1.1	Tomato	nucleus	28.21	32.67
Bra010573.1-P	Field mustard	nucleus	25.21	32.6

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100272993	MapMan:15.5.3.1	UniProt:B4FS71	EMBL:BT039959	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	ProteinID:ONM59088.1	PFAM:PF00046	PRINTS:PR00031	ScanProsite:PS00027
PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF281	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI00017B7F71
EnsemblPlantsGene:Zm00001d021934	EnsemblPlants:Zm00001d021934_P001	EnsemblPlants:Zm00001d021934_T001	SEG:seg	:	:

Description

Homeobox-transcription factor 13Homeobox-leucine zipper protein ATHB-40

Coordinates

chr7:+:166183894..166185410

Molecular Weight (calculated)

25744.3 Da

IEP (calculated)

6.720

GRAVY (calculated)

-0.643

Length

234 amino acids

Sequence
(BLAST)

001: MEQYDGLFPP AYVDSSSSLL LVPNANGTAQ EERPRARRRR RRAARCGGGG GELDGGGDHK KRRLTDEQVE MLELSFREER KLETGRKVHL AAELGLDPKQ
101: VAVWFQNRRA RHKSKLLEEE FAKLKQAHDA AILHKCHLEN EVMRLKDKLV LAEEELTRFR SAGNHAVSGD GGDVMARAVC SGSPSSSFST GTCQQPGGGG
201: GGGDHLGDDD LLYVPDYAYA DSSVVEWFSL YGLM

Best Arabidopsis Sequence Match ( AT4G36740.1 )
(BLAST)

001: MNYTVDDQNM AFISQLYPDV YTQIVQPGEV KQPKRRRKKT KGSVASADGG NGLFRKRKLT DEQVNMLEMS FGDEHKLESE RKDRLAAELG LDPRQVAVWF
101: QNRRARWKNK RLEEEYNKLK NSHDNVVVDK CRLESEVIQL KEQLYDAERE IQRLAERVEG GSSNSPISSS VSVEANETPF FGDYKVGDDG DDYDHLFYPV
201: PENSYIDEAE WMSLYI

Arabidopsis Description

HB-5homeobox protein 40 [Source:TAIR;Acc:AT4G36740]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.