Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d021934_P001 | Maize | nucleus | 88.74 | 87.61 |
| Zm00001d006687_P001 | Maize | nucleus | 82.68 | 86.04 |
| Os07t0581700-01 | Rice | nucleus | 73.59 | 70.83 |
| HORVU2Hr1G036680.2 | Barley | nucleus | 68.4 | 66.95 |
| TraesCS2A01G188500.1 | Wheat | nucleus | 67.53 | 65.55 |
| TraesCS2D01G199200.1 | Wheat | nucleus | 65.8 | 63.87 |
| TraesCS2B01G218800.1 | Wheat | nucleus | 64.5 | 62.6 |
| TraesCS2B01G405700.1 | Wheat | nucleus | 57.58 | 60.18 |
| TraesCSU01G009800.1 | Wheat | nucleus | 58.01 | 54.92 |
| TraesCS2D01G385500.1 | Wheat | nucleus | 57.58 | 53.85 |
| HORVU2Hr1G092300.1 | Barley | nucleus | 29.44 | 50.37 |
| GSMUA_Achr7P25990_001 | Banana | nucleus | 32.9 | 50.0 |
| EER92693 | Sorghum | nucleus | 49.78 | 47.52 |
| GSMUA_Achr4P07170_001 | Banana | nucleus | 41.13 | 47.26 |
| GSMUA_Achr1P22640_001 | Banana | nucleus | 37.23 | 47.25 |
| HORVU2Hr1G092290.6 | Barley | nucleus | 47.62 | 47.21 |
| CDY67008 | Canola | nucleus | 32.03 | 44.85 |
| GSMUA_Achr8P31170_001 | Banana | nucleus | 38.96 | 43.06 |
| VIT_04s0023g01330.t01 | Wine grape | nucleus | 38.96 | 42.65 |
| AT4G36740.2 | Thale cress | nucleus | 39.83 | 42.4 |
| KRH28621 | Soybean | nucleus | 38.96 | 41.86 |
| PGSC0003DMT400033036 | Potato | nucleus | 37.66 | 40.65 |
| CDX69241 | Canola | nucleus | 38.1 | 40.55 |
| AT2G18550.1 | Thale cress | nucleus | 38.53 | 40.45 |
| Solyc02g085630.2.1 | Tomato | nucleus | 36.8 | 40.09 |
| Solyc02g062960.2.1 | Tomato | nucleus | 35.5 | 40.0 |
| KRH76853 | Soybean | nucleus | 36.8 | 39.72 |
| CDY68376 | Canola | nucleus | 38.1 | 39.64 |
| CDX72601 | Canola | nucleus | 37.23 | 39.63 |
| Bra017780.1-P | Field mustard | nucleus | 37.23 | 39.63 |
| PGSC0003DMT400011464 | Potato | nucleus | 35.5 | 39.23 |
| Bra040941.1-P | Field mustard | nucleus | 37.66 | 39.19 |
| CDX75593 | Canola | nucleus | 36.8 | 39.17 |
| CDY30312 | Canola | nucleus | 37.66 | 39.01 |
| Bra028099.1-P | Field mustard | nucleus | 36.8 | 38.64 |
| Solyc03g034120.2.1 | Tomato | nucleus | 34.2 | 38.35 |
| KRH69950 | Soybean | nucleus | 34.63 | 37.74 |
| CDY24769 | Canola | nucleus | 35.93 | 37.73 |
| CDY35477 | Canola | nucleus | 35.93 | 37.73 |
| PGSC0003DMT400045834 | Potato | nucleus | 34.2 | 37.44 |
| Solyc03g034110.2.1 | Tomato | nucleus | 34.2 | 37.09 |
| PGSC0003DMT400045855 | Potato | nucleus | 34.2 | 37.09 |
| Bra012093.1-P | Field mustard | nucleus | 35.93 | 37.05 |
| CDY70377 | Canola | nucleus | 35.93 | 37.05 |
| CDY30761 | Canola | nucleus | 35.5 | 36.61 |
| CDX81374 | Canola | nucleus | 35.5 | 36.61 |
| Solyc03g034130.2.1 | Tomato | nucleus | 35.06 | 36.16 |
| AT5G66700.1 | Thale cress | nucleus | 35.5 | 35.96 |
| Bra031819.1-P | Field mustard | nucleus | 35.5 | 35.5 |
| CDY52162 | Canola | nucleus | 35.5 | 35.5 |
| PGSC0003DMT400045832 | Potato | nucleus | 35.5 | 35.34 |
| CDY57132 | Canola | nucleus | 34.2 | 35.11 |
| Bra037154.1-P | Field mustard | nucleus | 33.77 | 34.67 |
| PGSC0003DMT400050373 | Potato | nucleus | 24.24 | 33.94 |
| Bra010573.1-P | Field mustard | nucleus | 25.54 | 32.6 |
| GSMUA_Achr4P14070_001 | Banana | plastid | 41.13 | 32.42 |
| Solyc03g034150.1.1 | Tomato | nucleus | 28.14 | 32.18 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | EntrezGene:8078955 | UniProt:C5XCG1 | ncoils:Coil | EnsemblPlants:EER97443 |
| ProteinID:EER97443 | ProteinID:EER97443.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:HTH_motif |
| InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | PFAM:PF00046 | PRINTS:PR00031 |
| ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF281 | SMART:SM00389 | EnsemblPlantsGene:SORBI_3002G353800 |
| SUPFAM:SSF46689 | UniParc:UPI0001A837BB | RefSeq:XP_002460922.1 | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr2:+:71707176..71708719
Molecular Weight (calculated)
25587.1 Da
IEP (calculated)
6.515
GRAVY (calculated)
-0.648
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEYDGLFPS AYVDSSSSLL VPNGTAQGER PRARRRRRRA PRCGGGGDLD GGGDPKKRRL SDEQVEMLEL SFREERKLET GRKVHLAAEL GLDPKQVAVW
101: FQNRRARHKS KLLEEEFAKL KQAHDAAILH KCHLENEVMR LKERLVLAEE ELTRFRSAGS HAVSGDGGDI MGRAVCSGSP SSSFSTGTCH QPGVDVGGGD
201: HLGDDDQLLY VPDYAYADNS VVEWFSLYGL M
101: FQNRRARHKS KLLEEEFAKL KQAHDAAILH KCHLENEVMR LKERLVLAEE ELTRFRSAGS HAVSGDGGDI MGRAVCSGSP SSSFSTGTCH QPGVDVGGGD
201: HLGDDDQLLY VPDYAYADNS VVEWFSLYGL M
001: MNYTVDDQNM AFISQLYPDV YTQIVQPVGE VKQPKRRRKK TKGSVASADG GNGLFRKRKL TDEQVNMLEM SFGDEHKLES ERKDRLAAEL GLDPRQVAVW
101: FQNRRARWKN KRLEEEYNKL KNSHDNVVVD KCRLESEVIQ LKEQLYDAER EIQRLAERVE GGSSNSPISS SVSVEANETP FFGDYKVGDD GDDYDHLFYP
201: VPENSYIDEA EWMSLYI
101: FQNRRARWKN KRLEEEYNKL KNSHDNVVVD KCRLESEVIQ LKEQLYDAER EIQRLAERVE GGSSNSPISS SVSVEANETP FFGDYKVGDD GDDYDHLFYP
201: VPENSYIDEA EWMSLYI
Arabidopsis Description
HB-5homeobox protein 40 [Source:TAIR;Acc:AT4G36740]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.