Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY57132 | Canola | nucleus | 83.48 | 83.11 |
| CDY70377 | Canola | nucleus | 78.12 | 78.12 |
| CDY67008 | Canola | nucleus | 55.8 | 75.76 |
| CDY30761 | Canola | nucleus | 75.45 | 75.45 |
| CDY52162 | Canola | nucleus | 70.54 | 68.4 |
| AT5G66700.1 | Thale cress | nucleus | 67.41 | 66.23 |
| Solyc02g085630.2.1 | Tomato | nucleus | 45.98 | 48.58 |
| CDX69241 | Canola | nucleus | 46.43 | 47.93 |
| Solyc02g062960.2.1 | Tomato | nucleus | 43.75 | 47.8 |
| PGSC0003DMT400033036 | Potato | nucleus | 45.54 | 47.66 |
| CDX75593 | Canola | nucleus | 45.98 | 47.47 |
| PGSC0003DMT400011464 | Potato | nucleus | 44.2 | 47.37 |
| KRH76853 | Soybean | nucleus | 45.09 | 47.2 |
| VIT_04s0023g01330.t01 | Wine grape | nucleus | 44.2 | 46.92 |
| CDX72601 | Canola | nucleus | 44.64 | 46.08 |
| GSMUA_Achr7P25990_001 | Banana | nucleus | 31.25 | 46.05 |
| KRH28621 | Soybean | nucleus | 44.2 | 46.05 |
| Solyc03g034120.2.1 | Tomato | nucleus | 41.96 | 45.63 |
| PGSC0003DMT400045834 | Potato | nucleus | 42.86 | 45.5 |
| PGSC0003DMT400045855 | Potato | nucleus | 42.41 | 44.6 |
| CDY68376 | Canola | nucleus | 43.3 | 43.69 |
| Solyc03g034110.2.1 | Tomato | nucleus | 41.52 | 43.66 |
| Solyc03g034130.2.1 | Tomato | nucleus | 43.3 | 43.3 |
| CDY30312 | Canola | nucleus | 42.86 | 43.05 |
| CDY35477 | Canola | nucleus | 41.96 | 42.73 |
| CDY24769 | Canola | nucleus | 41.96 | 42.73 |
| KRH69950 | Soybean | nucleus | 39.29 | 41.51 |
| GSMUA_Achr1P22640_001 | Banana | nucleus | 33.04 | 40.66 |
| PGSC0003DMT400050373 | Potato | nucleus | 29.91 | 40.61 |
| Solyc03g034150.1.1 | Tomato | nucleus | 35.71 | 39.6 |
| HORVU2Hr1G092300.1 | Barley | nucleus | 23.66 | 39.26 |
| PGSC0003DMT400045832 | Potato | nucleus | 39.29 | 37.93 |
| Zm00001d006687_P001 | Maize | nucleus | 36.16 | 36.49 |
| EER97443 | Sorghum | nucleus | 36.61 | 35.5 |
| TraesCS2A01G188500.1 | Wheat | nucleus | 37.5 | 35.29 |
| HORVU2Hr1G036680.2 | Barley | nucleus | 37.05 | 35.17 |
| TraesCS2B01G218800.1 | Wheat | nucleus | 37.05 | 34.87 |
| TraesCS2D01G199200.1 | Wheat | nucleus | 37.05 | 34.87 |
| GSMUA_Achr8P31170_001 | Banana | nucleus | 32.14 | 34.45 |
| Zm00001d021934_P001 | Maize | nucleus | 35.71 | 34.19 |
| Os07t0581700-01 | Rice | nucleus | 36.61 | 34.17 |
| TraesCS2B01G405700.1 | Wheat | nucleus | 33.48 | 33.94 |
| Os03t0198600-01 | Rice | nucleus | 35.71 | 33.47 |
| GSMUA_Achr4P07170_001 | Banana | nucleus | 29.91 | 33.33 |
| EER92693 | Sorghum | nucleus | 34.82 | 32.23 |
| HORVU4Hr1G070610.1 | Barley | nucleus | 32.59 | 31.88 |
| Zm00001d028129_P002 | Maize | nucleus, plastid | 33.93 | 31.8 |
| TraesCS4B01G261600.1 | Wheat | nucleus | 33.04 | 31.76 |
| TraesCSU01G009800.1 | Wheat | nucleus | 34.38 | 31.56 |
| TraesCS4D01G261600.1 | Wheat | nucleus | 32.59 | 31.2 |
| HORVU2Hr1G092290.6 | Barley | nucleus | 32.14 | 30.9 |
| TraesCS2D01G385500.1 | Wheat | nucleus | 33.93 | 30.77 |
| TraesCS4A01G040600.1 | Wheat | nucleus | 31.7 | 30.74 |
| Zm00001d048172_P001 | Maize | nucleus | 30.36 | 29.06 |
| GSMUA_Achr4P14070_001 | Banana | plastid | 36.16 | 27.65 |
| CDY16214 | Canola | nucleus | 25.45 | 24.89 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | GO:A0A078CZF9 | EnsemblPlants:CDX81374 | ProteinID:CDX81374 | ProteinID:CDX81374.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00134935001 | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 |
| PFAM:PF00046 | PRINTS:PR00031 | ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF281 |
| SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI0004EE5734 | SEG:seg | : | : |
Description
BnaC09g07850D
Coordinates
chrLK031824:-:1313455..1314582
Molecular Weight (calculated)
25944.6 Da
IEP (calculated)
7.060
GRAVY (calculated)
-0.846
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQMVLGSHV YPYTTPTHSQ CIIVNQIDGA PSGDGSKPVR RRRKRRSKGS SPTNEDDVAT IGAMLRKRKL TDEQMNMLEY SFENEHKLES GRKEKIAREL
101: GLDPRQVAVW FQNRRARWKN KKLEEEYAKL KSQHDTVLLG QCHLESQLLK LTEQLSEAQN EIRKLSERLV QETSANSSSS SLSVEANYAP IEFEFAPDTN
201: YNIPFYMMDS NYLQNMEYWD GLYV
101: GLDPRQVAVW FQNRRARWKN KKLEEEYAKL KSQHDTVLLG QCHLESQLLK LTEQLSEAQN EIRKLSERLV QETSANSSSS SLSVEANYAP IEFEFAPDTN
201: YNIPFYMMDS NYLQNMEYWD GLYV
001: MDHGRLMDDQ MMLGSQVYPY TTQPQNSHCI IVNQIDGGEE SKPVKRRRKR RSKGSSATNE EDVAEIGGML RKRKLTDEQV NMLEYSFGNE HKLESGRKEK
101: IAGELGLDPR QVAVWFQNRR ARWKNKKLEE EYAKLKNHHD NVVLGQCQLE SQILKLTEQL SEAQSEIRKL SERLEEMPTN SSSSSLSVEA NNAPTDFELA
201: PETNYNIPFY MLDNNYLQSM EYWDGLYV
101: IAGELGLDPR QVAVWFQNRR ARWKNKKLEE EYAKLKNHHD NVVLGQCQLE SQILKLTEQL SEAQSEIRKL SERLEEMPTN SSSSSLSVEA NNAPTDFELA
201: PETNYNIPFY MLDNNYLQSM EYWDGLYV
Arabidopsis Description
ATHB-53Homeobox-leucine zipper protein ATHB-53 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVR0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.