Factsheet for GSMUA_Achr1P22640_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P25990_001	Banana	nucleus	41.76	50.0
GSMUA_Achr4P07170_001	Banana	nucleus	51.65	46.77
GSMUA_Achr8P31170_001	Banana	nucleus	52.75	45.93
CDY67008	Canola	nucleus	38.46	42.42
Solyc02g085630.2.1	Tomato	nucleus	48.35	41.51
VIT_04s0023g01330.t01	Wine grape	nucleus	47.25	40.76
PGSC0003DMT400033036	Potato	nucleus	47.8	40.65
Bra040941.1-P	Field mustard	nucleus	48.35	39.64
AT4G36740.2	Thale cress	nucleus	47.25	39.63
Solyc02g062960.2.1	Tomato	nucleus	44.51	39.51
CDY30312	Canola	nucleus	48.35	39.46
PGSC0003DMT400050373	Potato	nucleus	35.71	39.39
CDY68376	Canola	nucleus	47.8	39.19
CDX69241	Canola	nucleus	46.7	39.17
CDX75593	Canola	nucleus	46.7	39.17
Os07t0581700-01	Rice	nucleus	51.1	38.75
HORVU2Hr1G092300.1	Barley	nucleus	28.57	38.52
KRH76853	Soybean	nucleus	45.05	38.32
PGSC0003DMT400011464	Potato	nucleus	43.96	38.28
Bra017780.1-P	Field mustard	nucleus	45.6	38.25
CDX72601	Canola	nucleus	45.6	38.25
HORVU2Hr1G036680.2	Barley	nucleus	49.45	38.14
Solyc03g034120.2.1	Tomato	nucleus	42.86	37.86
Zm00001d006687_P001	Maize	nucleus	46.15	37.84
TraesCS2D01G199200.1	Wheat	nucleus	49.45	37.82
Bra028099.1-P	Field mustard	nucleus	45.6	37.73
CDY24769	Canola	nucleus	45.6	37.73
KRH28621	Soybean	nucleus	44.51	37.67
Zm00001d028129_P002	Maize	nucleus, plastid	49.45	37.66
Zm00001d021934_P001	Maize	nucleus	48.35	37.61
EER92693	Sorghum	nucleus	50.0	37.6
PGSC0003DMT400045834	Potato	nucleus	43.41	37.44
TraesCS2B01G218800.1	Wheat	nucleus	48.9	37.4
TraesCS2A01G188500.1	Wheat	nucleus	48.9	37.4
TraesCS4B01G261600.1	Wheat	nucleus	47.8	37.34
EER97443	Sorghum	nucleus	47.25	37.23
TraesCS2B01G405700.1	Wheat	nucleus	45.05	37.1
Os03t0198600-01	Rice	nucleus	48.35	36.82
AT2G18550.1	Thale cress	nucleus	44.51	36.82
CDY35477	Canola	nucleus	44.51	36.82
HORVU4Hr1G070610.1	Barley	nucleus	45.6	36.24
Solyc03g034110.2.1	Tomato	nucleus	42.31	36.15
TraesCS4A01G040600.1	Wheat	nucleus	45.6	35.93
Zm00001d048172_P001	Maize	nucleus	46.15	35.9
TraesCS4D01G261600.1	Wheat	nucleus	46.15	35.9
PGSC0003DMT400045855	Potato	nucleus	41.76	35.68
CDY70377	Canola	nucleus	43.41	35.27
Bra012093.1-P	Field mustard	nucleus	43.41	35.27
CDY30761	Canola	nucleus	42.31	34.38
GSMUA_Achr4P14070_001	Banana	plastid	54.95	34.13
PGSC0003DMT400045832	Potato	nucleus	43.41	34.05
TraesCS2D01G385500.1	Wheat	nucleus	46.15	34.01
Solyc03g034130.2.1	Tomato	nucleus	41.21	33.48
TraesCSU01G009800.1	Wheat	nucleus	44.51	33.2
CDX81374	Canola	nucleus	40.66	33.04
KRH69950	Soybean	nucleus	38.46	33.02
AT5G66700.1	Thale cress	nucleus	41.21	32.89
Solyc03g034150.1.1	Tomato	nucleus	36.26	32.67
Bra031819.1-P	Field mustard	nucleus	41.21	32.47
CDY52162	Canola	nucleus	40.66	32.03
CDY57132	Canola	nucleus	39.56	32.0
Bra037154.1-P	Field mustard	nucleus	39.01	31.56
Bra010573.1-P	Field mustard	nucleus	30.77	30.94
HORVU2Hr1G092290.6	Barley	nucleus	39.56	30.9

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
EnsemblPlantsGene:GSMUA_Achr1G22640_001	EnsemblPlants:GSMUA_Achr1P22640_001	EnsemblPlants:GSMUA_Achr1T22640_001	InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	UniProt:M0S272	PFAM:PF00046	PRINTS:PR00031	ScanProsite:PS00027
PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF281	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI000295EDBA
SEG:seg	:	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G22640_001]

Coordinates

chr1:+:17042897..17044941

Molecular Weight (calculated)

20963.1 Da

IEP (calculated)

9.685

GRAVY (calculated)

-0.754

Length

182 amino acids

Sequence
(BLAST)

001: MLVLPMVGET RVRRRRKRTK GEGAEGDAKK RRLSDEQVRF LETSFGEEKK LEFERKVHLA AELGLDPKQV AVWFQNRRAR HKSKQVEEAY LKLKSIHDAT
101: VVEKCHLETE VLKLKDKLHE AEEEIRKLSL VANGGVVGGN GESAFTVETT PITEQTLYFR GSPPFMFSSY HHENLPSREK DF

Best Arabidopsis Sequence Match ( AT4G36740.2 )
(BLAST)

001: MNYTVDDQNM AFISQLYPDV YTQIVQPVGE VKQPKRRRKK TKGSVASADG GNGLFRKRKL TDEQVNMLEM SFGDEHKLES ERKDRLAAEL GLDPRQVAVW
101: FQNRRARWKN KRLEEEYNKL KNSHDNVVVD KCRLESEVIQ LKEQLYDAER EIQRLAERVE GGSSNSPISS SVSVEANETP FFGDYKVGDD GDDYDHLFYP
201: VPENSYIDEA EWMSLYI

Arabidopsis Description

HB-5homeobox protein 40 [Source:TAIR;Acc:AT4G36740]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.