Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75593 | Canola | nucleus | 92.63 | 92.63 |
| AT4G36740.2 | Thale cress | nucleus | 86.18 | 86.18 |
| CDX72601 | Canola | nucleus | 82.95 | 82.95 |
| CDY35477 | Canola | nucleus | 81.11 | 80.0 |
| CDY24769 | Canola | nucleus | 76.5 | 75.45 |
| CDY30312 | Canola | nucleus | 70.97 | 69.06 |
| CDY68376 | Canola | nucleus | 70.05 | 68.47 |
| Solyc02g085630.2.1 | Tomato | nucleus | 62.67 | 64.15 |
| PGSC0003DMT400033036 | Potato | nucleus | 59.45 | 60.28 |
| VIT_04s0023g01330.t01 | Wine grape | nucleus | 56.68 | 58.29 |
| Solyc02g062960.2.1 | Tomato | nucleus | 54.84 | 58.05 |
| PGSC0003DMT400011464 | Potato | nucleus | 55.76 | 57.89 |
| KRH28621 | Soybean | nucleus | 55.3 | 55.81 |
| KRH76853 | Soybean | nucleus | 53.0 | 53.74 |
| CDY67008 | Canola | nucleus | 40.55 | 53.33 |
| Solyc03g034120.2.1 | Tomato | nucleus | 48.85 | 51.46 |
| PGSC0003DMT400045834 | Potato | nucleus | 49.77 | 51.18 |
| PGSC0003DMT400050373 | Potato | nucleus | 38.71 | 50.91 |
| CDY70377 | Canola | nucleus | 49.77 | 48.21 |
| CDY30761 | Canola | nucleus | 49.77 | 48.21 |
| PGSC0003DMT400045855 | Potato | nucleus | 47.0 | 47.89 |
| GSMUA_Achr7P25990_001 | Banana | nucleus | 33.18 | 47.37 |
| CDY57132 | Canola | nucleus | 48.85 | 47.11 |
| Solyc03g034150.1.1 | Tomato | nucleus | 43.78 | 47.03 |
| Solyc03g034110.2.1 | Tomato | nucleus | 46.08 | 46.95 |
| Solyc03g034130.2.1 | Tomato | nucleus | 48.39 | 46.88 |
| GSMUA_Achr1P22640_001 | Banana | nucleus | 39.17 | 46.7 |
| KRH69950 | Soybean | nucleus | 45.62 | 46.7 |
| CDX81374 | Canola | nucleus | 47.93 | 46.43 |
| CDY52162 | Canola | nucleus | 47.0 | 44.16 |
| PGSC0003DMT400045832 | Potato | nucleus | 46.54 | 43.53 |
| HORVU2Hr1G092300.1 | Barley | nucleus | 24.88 | 40.0 |
| GSMUA_Achr4P07170_001 | Banana | nucleus | 36.87 | 39.8 |
| GSMUA_Achr8P31170_001 | Banana | nucleus | 37.33 | 38.76 |
| EER97443 | Sorghum | nucleus | 40.55 | 38.1 |
| Zm00001d021934_P001 | Maize | nucleus | 41.01 | 38.03 |
| TraesCS2B01G405700.1 | Wheat | nucleus | 38.71 | 38.01 |
| HORVU2Hr1G036680.2 | Barley | nucleus | 41.01 | 37.71 |
| Zm00001d006687_P001 | Maize | nucleus | 38.25 | 37.39 |
| Os07t0581700-01 | Rice | nucleus | 41.01 | 37.08 |
| TraesCS2D01G199200.1 | Wheat | nucleus | 40.55 | 36.97 |
| TraesCS2A01G188500.1 | Wheat | nucleus | 40.09 | 36.55 |
| TraesCS2B01G218800.1 | Wheat | nucleus | 40.09 | 36.55 |
| Os03t0198600-01 | Rice | nucleus | 39.63 | 35.98 |
| HORVU4Hr1G070610.1 | Barley | nucleus | 36.41 | 34.5 |
| TraesCS4D01G261600.1 | Wheat | nucleus | 36.87 | 34.19 |
| TraesCS2D01G385500.1 | Wheat | nucleus | 38.71 | 34.01 |
| TraesCS4B01G261600.1 | Wheat | nucleus | 36.41 | 33.91 |
| TraesCS4A01G040600.1 | Wheat | nucleus | 35.94 | 33.77 |
| TraesCSU01G009800.1 | Wheat | nucleus | 37.79 | 33.61 |
| EER92693 | Sorghum | nucleus | 36.87 | 33.06 |
| Zm00001d028129_P002 | Maize | nucleus, plastid | 35.94 | 32.64 |
| HORVU2Hr1G092290.6 | Barley | nucleus | 34.56 | 32.19 |
| Zm00001d048172_P001 | Maize | nucleus | 34.1 | 31.62 |
| GSMUA_Achr4P14070_001 | Banana | plastid | 40.09 | 29.69 |
| CDY16214 | Canola | nucleus | 26.73 | 25.33 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | GO:A0A078BWQ7 | EnsemblPlants:CDX69241 | ProteinID:CDX69241 | ProteinID:CDX69241.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00131048001 | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 |
| PFAM:PF00046 | PRINTS:PR00031 | ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF281 |
| SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI0004EEBE40 | SEG:seg | : | : |
Description
BnaC01g02120D
Coordinates
chrLK031789:-:3672476..3674476
Molecular Weight (calculated)
25070.4 Da
IEP (calculated)
5.475
GRAVY (calculated)
-0.869
Length
217 amino acids
Sequence
(BLAST)
(BLAST)
001: MNHTLDDQNM AFISQLYPDV YTQIVPQQGE VKPPKRRRKK SKAAVASGDG SNCLFRKRKL TDEQVNMLEM SFGDEHKLES ERKDKLAAEL GLDPRQVAVW
101: FQNRRARWKN KRLEEEYNKL KNSHDNVVVD KCRLESELLR LKEQLYDAER EIQRLAERVE GGSSNSPVSS SVSVEANGTP FFGDYKVGDD GDDYSNLFYP
201: VPENIYIDGA EWMNLYI
101: FQNRRARWKN KRLEEEYNKL KNSHDNVVVD KCRLESELLR LKEQLYDAER EIQRLAERVE GGSSNSPVSS SVSVEANGTP FFGDYKVGDD GDDYSNLFYP
201: VPENIYIDGA EWMNLYI
001: MNYTVDDQNM AFISQLYPDV YTQIVQPVGE VKQPKRRRKK TKGSVASADG GNGLFRKRKL TDEQVNMLEM SFGDEHKLES ERKDRLAAEL GLDPRQVAVW
101: FQNRRARWKN KRLEEEYNKL KNSHDNVVVD KCRLESEVIQ LKEQLYDAER EIQRLAERVE GGSSNSPISS SVSVEANETP FFGDYKVGDD GDDYDHLFYP
201: VPENSYIDEA EWMSLYI
101: FQNRRARWKN KRLEEEYNKL KNSHDNVVVD KCRLESEVIQ LKEQLYDAER EIQRLAERVE GGSSNSPISS SVSVEANETP FFGDYKVGDD GDDYDHLFYP
201: VPENSYIDEA EWMSLYI
Arabidopsis Description
HB-5homeobox protein 40 [Source:TAIR;Acc:AT4G36740]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.