Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d028129_P002 | Maize | nucleus, plastid | 68.8 | 67.36 |
| Os03t0198600-01 | Rice | nucleus | 66.67 | 65.27 |
| TraesCS4D01G261600.1 | Wheat | nucleus | 58.97 | 58.97 |
| TraesCS4B01G261600.1 | Wheat | nucleus | 56.41 | 56.65 |
| TraesCS4A01G040600.1 | Wheat | nucleus | 55.13 | 55.84 |
| HORVU4Hr1G070610.1 | Barley | nucleus | 54.27 | 55.46 |
| GSMUA_Achr7P25990_001 | Banana | nucleus | 34.19 | 52.63 |
| GSMUA_Achr1P22640_001 | Banana | nucleus | 35.9 | 46.15 |
| Zm00001d006687_P001 | Maize | nucleus | 42.73 | 45.05 |
| Zm00001d021934_P001 | Maize | nucleus | 44.02 | 44.02 |
| GSMUA_Achr4P07170_001 | Banana | nucleus | 36.75 | 42.79 |
| CDY67008 | Canola | nucleus | 29.49 | 41.82 |
| VIT_04s0023g01330.t01 | Wine grape | nucleus | 35.47 | 39.34 |
| GSMUA_Achr8P31170_001 | Banana | nucleus | 33.76 | 37.8 |
| PGSC0003DMT400033036 | Potato | nucleus | 34.19 | 37.38 |
| KRH28621 | Soybean | nucleus | 34.19 | 37.21 |
| Solyc02g085630.2.1 | Tomato | nucleus | 33.33 | 36.79 |
| KRH76853 | Soybean | nucleus | 33.33 | 36.45 |
| Solyc02g062960.2.1 | Tomato | nucleus | 30.77 | 35.12 |
| PGSC0003DMT400045834 | Potato | nucleus | 31.62 | 35.07 |
| CDY68376 | Canola | nucleus | 32.91 | 34.68 |
| Bra040941.1-P | Field mustard | nucleus | 32.91 | 34.68 |
| CDX75593 | Canola | nucleus | 32.05 | 34.56 |
| CDY30312 | Canola | nucleus | 32.91 | 34.53 |
| PGSC0003DMT400011464 | Potato | nucleus | 30.77 | 34.45 |
| AT4G36740.2 | Thale cress | nucleus | 31.62 | 34.1 |
| CDX69241 | Canola | nucleus | 31.62 | 34.1 |
| KRH69950 | Soybean | nucleus | 30.77 | 33.96 |
| Solyc03g034110.2.1 | Tomato | nucleus | 30.77 | 33.8 |
| CDX72601 | Canola | nucleus | 31.2 | 33.64 |
| Bra028099.1-P | Field mustard | nucleus | 31.62 | 33.64 |
| PGSC0003DMT400045855 | Potato | nucleus | 30.34 | 33.33 |
| CDY35477 | Canola | nucleus | 31.2 | 33.18 |
| CDY24769 | Canola | nucleus | 31.2 | 33.18 |
| PGSC0003DMT400050373 | Potato | nucleus | 23.08 | 32.73 |
| Bra017780.1-P | Field mustard | nucleus | 30.34 | 32.72 |
| PGSC0003DMT400045832 | Potato | nucleus | 32.05 | 32.33 |
| Bra012093.1-P | Field mustard | nucleus | 30.77 | 32.14 |
| Solyc03g034130.2.1 | Tomato | nucleus | 30.77 | 32.14 |
| CDY70377 | Canola | nucleus | 30.77 | 32.14 |
| Solyc03g034120.2.1 | Tomato | nucleus | 28.21 | 32.04 |
| AT5G66700.1 | Thale cress | nucleus | 31.2 | 32.02 |
| AT2G18550.1 | Thale cress | nucleus | 29.91 | 31.82 |
| CDY30761 | Canola | nucleus | 30.34 | 31.7 |
| Bra031819.1-P | Field mustard | nucleus | 31.2 | 31.6 |
| CDY52162 | Canola | nucleus | 31.2 | 31.6 |
| Solyc03g034150.1.1 | Tomato | nucleus | 26.92 | 31.19 |
| CDX81374 | Canola | nucleus | 29.06 | 30.36 |
| CDY57132 | Canola | nucleus | 29.06 | 30.22 |
| Bra037154.1-P | Field mustard | nucleus | 28.63 | 29.78 |
| GSMUA_Achr4P14070_001 | Banana | plastid | 37.18 | 29.69 |
| Bra010573.1-P | Field mustard | nucleus | 21.79 | 28.18 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | UniProt:A0A1D6PI92 | ProteinID:AQL09039.1 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom |
| InterPro:IPR001356 | PFAM:PF00046 | PRINTS:PR00031 | ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 |
| PANTHER:PTHR24326:SF262 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI000842D594 | EnsemblPlantsGene:Zm00001d048172 | EnsemblPlants:Zm00001d048172_P001 |
| EnsemblPlants:Zm00001d048172_T001 | SEG:seg | : | : | : | : |
Description
Homeobox-leucine zipper protein ATHB-40
Coordinates
chr9:+:151391338..151392319
Molecular Weight (calculated)
25892.2 Da
IEP (calculated)
5.640
GRAVY (calculated)
-0.517
Length
234 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCEEEDRLL FPSFAFTESF TEAGATATTP GSGEYFTYTS SLTKARQLSE GQARKRRLSD GQARFLELSF GKERKLETPR KVQLAAELGL DAKQVAVWFQ
101: NRRARHKSKL MEEEFSRLRA AHDAAVLHNC HLETELLKVK DRLAEAEEEK TKLIAAAAGG AGSSSPSSSS SSFSTVTTTQ QHHTAALVGQ FGVEQEEEAA
201: DLTTYMSEYA YNSYMNMMDL APGYFGGVVY DHFN
101: NRRARHKSKL MEEEFSRLRA AHDAAVLHNC HLETELLKVK DRLAEAEEEK TKLIAAAAGG AGSSSPSSSS SSFSTVTTTQ QHHTAALVGQ FGVEQEEEAA
201: DLTTYMSEYA YNSYMNMMDL APGYFGGVVY DHFN
001: MNYTVDDQNM AFISQLYPDV YTQIVQPVGE VKQPKRRRKK TKGSVASADG GNGLFRKRKL TDEQVNMLEM SFGDEHKLES ERKDRLAAEL GLDPRQVAVW
101: FQNRRARWKN KRLEEEYNKL KNSHDNVVVD KCRLESEVIQ LKEQLYDAER EIQRLAERVE GGSSNSPISS SVSVEANETP FFGDYKVGDD GDDYDHLFYP
201: VPENSYIDEA EWMSLYI
101: FQNRRARWKN KRLEEEYNKL KNSHDNVVVD KCRLESEVIQ LKEQLYDAER EIQRLAERVE GGSSNSPISS SVSVEANETP FFGDYKVGDD GDDYDHLFYP
201: VPENSYIDEA EWMSLYI
Arabidopsis Description
HB-5homeobox protein 40 [Source:TAIR;Acc:AT4G36740]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.