Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRH76853 | Soybean | nucleus | 85.12 | 85.51 |
KRH69950 | Soybean | nucleus | 62.33 | 63.21 |
Solyc02g085630.2.1 | Tomato | nucleus | 60.93 | 61.79 |
VIT_04s0023g01330.t01 | Wine grape | nucleus | 59.07 | 60.19 |
Solyc02g062960.2.1 | Tomato | nucleus | 55.81 | 58.54 |
PGSC0003DMT400011464 | Potato | nucleus | 56.28 | 57.89 |
PGSC0003DMT400033036 | Potato | nucleus | 56.74 | 57.01 |
Solyc03g034120.2.1 | Tomato | nucleus | 53.02 | 55.34 |
CDX69241 | Canola | nucleus | 55.81 | 55.3 |
AT4G36740.2 | Thale cress | nucleus | 54.42 | 53.92 |
CDX75593 | Canola | nucleus | 54.42 | 53.92 |
Bra040941.1-P | Field mustard | nucleus | 55.35 | 53.6 |
CDX72601 | Canola | nucleus | 53.95 | 53.46 |
Bra017780.1-P | Field mustard | nucleus | 53.49 | 53.0 |
CDY30312 | Canola | nucleus | 54.88 | 52.91 |
CDY68376 | Canola | nucleus | 54.42 | 52.7 |
PGSC0003DMT400045834 | Potato | nucleus | 51.63 | 52.61 |
PGSC0003DMT400045855 | Potato | nucleus | 51.63 | 52.11 |
AT2G18550.1 | Thale cress | nucleus | 52.56 | 51.36 |
CDY35477 | Canola | nucleus | 51.63 | 50.45 |
Solyc03g034130.2.1 | Tomato | nucleus | 52.56 | 50.45 |
CDY67008 | Canola | nucleus | 38.6 | 50.3 |
Solyc03g034110.2.1 | Tomato | nucleus | 49.77 | 50.23 |
CDY24769 | Canola | nucleus | 50.23 | 49.09 |
Bra028099.1-P | Field mustard | nucleus | 49.77 | 48.64 |
PGSC0003DMT400045832 | Potato | nucleus | 51.63 | 47.84 |
GSMUA_Achr7P25990_001 | Banana | nucleus | 33.49 | 47.37 |
PGSC0003DMT400050373 | Potato | nucleus | 35.81 | 46.67 |
AT5G66700.1 | Thale cress | nucleus | 49.3 | 46.49 |
Bra010573.1-P | Field mustard | nucleus | 39.07 | 46.41 |
Solyc03g034150.1.1 | Tomato | nucleus | 43.26 | 46.04 |
GSMUA_Achr1P22640_001 | Banana | nucleus | 37.67 | 44.51 |
CDY57132 | Canola | nucleus | 46.51 | 44.44 |
Bra012093.1-P | Field mustard | nucleus | 46.05 | 44.2 |
CDX81374 | Canola | nucleus | 46.05 | 44.2 |
CDY70377 | Canola | nucleus | 46.05 | 44.2 |
Bra037154.1-P | Field mustard | nucleus | 45.58 | 43.56 |
CDY30761 | Canola | nucleus | 45.12 | 43.3 |
GSMUA_Achr8P31170_001 | Banana | nucleus | 40.47 | 41.63 |
CDY52162 | Canola | nucleus | 44.65 | 41.56 |
Bra031819.1-P | Field mustard | nucleus | 44.65 | 41.56 |
GSMUA_Achr4P07170_001 | Banana | nucleus | 38.14 | 40.8 |
EER97443 | Sorghum | nucleus | 41.86 | 38.96 |
Zm00001d021934_P001 | Maize | nucleus | 42.33 | 38.89 |
Os07t0581700-01 | Rice | nucleus | 43.26 | 38.75 |
HORVU2Hr1G036680.2 | Barley | nucleus | 42.33 | 38.56 |
HORVU2Hr1G092300.1 | Barley | nucleus | 24.19 | 38.52 |
TraesCS2B01G405700.1 | Wheat | nucleus | 39.07 | 38.01 |
Zm00001d006687_P001 | Maize | nucleus | 39.07 | 37.84 |
TraesCS2D01G199200.1 | Wheat | nucleus | 40.93 | 36.97 |
TraesCS2A01G188500.1 | Wheat | nucleus | 40.47 | 36.55 |
TraesCS2B01G218800.1 | Wheat | nucleus | 40.0 | 36.13 |
Os03t0198600-01 | Rice | nucleus | 40.0 | 35.98 |
HORVU4Hr1G070610.1 | Barley | nucleus | 38.14 | 35.81 |
Zm00001d028129_P002 | Maize | nucleus, plastid | 39.53 | 35.56 |
EER92693 | Sorghum | nucleus | 39.53 | 35.12 |
TraesCS4A01G040600.1 | Wheat | nucleus | 37.67 | 35.06 |
TraesCS4B01G261600.1 | Wheat | nucleus | 37.67 | 34.76 |
TraesCS2D01G385500.1 | Wheat | nucleus | 39.53 | 34.41 |
TraesCS4D01G261600.1 | Wheat | nucleus | 37.21 | 34.19 |
Zm00001d048172_P001 | Maize | nucleus | 37.21 | 34.19 |
TraesCSU01G009800.1 | Wheat | nucleus | 38.14 | 33.61 |
HORVU2Hr1G092290.6 | Barley | nucleus | 35.81 | 33.05 |
GSMUA_Achr4P14070_001 | Banana | plastid | 41.86 | 30.72 |
Protein Annotations
Gene3D:1.10.10.60 | EntrezGene:100810736 | MapMan:15.5.3.1 | UniProt:A0A0K2CTA5 | EMBL:ACUP02006760 | ncoils:Coil |
EnsemblPlantsGene:GLYMA_11G064800 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:HTH_motif | InterPro:Homeobox-like_sf |
InterPro:Homeobox_CS | InterPro:Homeobox_dom | UniProt:I1LHN6 | InterPro:IPR001356 | EnsemblPlants:KRH28621 | ProteinID:KRH28621 |
ProteinID:KRH28621.1 | EMBL:KT031168 | PFAM:PF00046 | PRINTS:PR00031 | ScanProsite:PS00027 | PFscan:PS50071 |
PANTHER:PTHR24326 | PANTHER:PTHR24326:SF281 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI0001B37161 | SEG:seg |
Description
hypothetical protein
Coordinates
chr11:+:4909763..4912078
Molecular Weight (calculated)
25119.7 Da
IEP (calculated)
6.955
GRAVY (calculated)
-1.014
Length
215 amino acids
Sequence
(BLAST)
(BLAST)
001: MNHRPPFQDH MMLMSQLFPA DAYTQIISQQ GETNKKPRRR RNKKNKGGEN GASEANKKRK LSEVQVNLLE QNFGNERKLE SERKDRLAME LGLDPRQVAV
101: WFQNRRARWK NKKLEEEYSS LKKNHEATLL EKCCLESEVL KLKEQLSEAE KEIQRLLESA ERVPSNSSSS SQSQSMEAVD PPFFGEFGVD GYEDDVFYVP
201: ETHYINGMEW INLYM
101: WFQNRRARWK NKKLEEEYSS LKKNHEATLL EKCCLESEVL KLKEQLSEAE KEIQRLLESA ERVPSNSSSS SQSQSMEAVD PPFFGEFGVD GYEDDVFYVP
201: ETHYINGMEW INLYM
001: MNYTVDDQNM AFISQLYPDV YTQIVQPVGE VKQPKRRRKK TKGSVASADG GNGLFRKRKL TDEQVNMLEM SFGDEHKLES ERKDRLAAEL GLDPRQVAVW
101: FQNRRARWKN KRLEEEYNKL KNSHDNVVVD KCRLESEVIQ LKEQLYDAER EIQRLAERVE GGSSNSPISS SVSVEANETP FFGDYKVGDD GDDYDHLFYP
201: VPENSYIDEA EWMSLYI
101: FQNRRARWKN KRLEEEYNKL KNSHDNVVVD KCRLESEVIQ LKEQLYDAER EIQRLAERVE GGSSNSPISS SVSVEANETP FFGDYKVGDD GDDYDHLFYP
201: VPENSYIDEA EWMSLYI
Arabidopsis Description
HB-5homeobox protein 40 [Source:TAIR;Acc:AT4G36740]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.