CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28621	Soybean	nucleus	63.21	62.33
KRH76853	Soybean	nucleus	62.26	61.68
VIT_04s0023g01330.t01	Wine grape	nucleus	52.83	53.08
PGSC0003DMT400011464	Potato	nucleus	50.0	50.72
Solyc02g062960.2.1	Tomato	nucleus	48.58	50.24
Solyc02g085630.2.1	Tomato	nucleus	49.53	49.53
PGSC0003DMT400033036	Potato	nucleus	49.06	48.6
Solyc03g034120.2.1	Tomato	nucleus	45.75	47.09
CDX72601	Canola	nucleus	48.11	47.0
CDX75593	Canola	nucleus	48.11	47.0
CDY68376	Canola	nucleus	48.58	46.4
CDY30312	Canola	nucleus	48.58	46.19
Bra017780.1-P	Field mustard	nucleus	47.17	46.08
Bra040941.1-P	Field mustard	nucleus	48.11	45.95
CDX69241	Canola	nucleus	46.7	45.62
CDY24769	Canola	nucleus	47.17	45.45
CDY35477	Canola	nucleus	47.17	45.45
CDY67008	Canola	nucleus	35.38	45.45
Bra028099.1-P	Field mustard	nucleus	45.75	44.09
AT2G18550.1	Thale cress	nucleus	45.75	44.09
PGSC0003DMT400045834	Potato	nucleus	43.87	44.08
AT4G36740.2	Thale cress	nucleus	44.81	43.78
GSMUA_Achr7P25990_001	Banana	nucleus	31.13	43.42
Solyc03g034130.2.1	Tomato	nucleus	45.75	43.3
Solyc03g034110.2.1	Tomato	nucleus	42.92	42.72
PGSC0003DMT400045855	Potato	nucleus	42.92	42.72
Bra010573.1-P	Field mustard	nucleus	35.85	41.99
PGSC0003DMT400045832	Potato	nucleus	45.28	41.38
PGSC0003DMT400050373	Potato	nucleus	32.08	41.21
AT5G66700.1	Thale cress	nucleus	42.92	39.91
CDX81374	Canola	nucleus	41.51	39.29
CDY57132	Canola	nucleus	41.51	39.11
CDY70377	Canola	nucleus	41.04	38.84
Bra012093.1-P	Field mustard	nucleus	41.04	38.84
Bra037154.1-P	Field mustard	nucleus	41.04	38.67
GSMUA_Achr1P22640_001	Banana	nucleus	33.02	38.46
CDY30761	Canola	nucleus	40.09	37.95
Solyc03g034150.1.1	Tomato	nucleus	35.85	37.62
HORVU2Hr1G036680.2	Barley	nucleus	40.57	36.44
Bra031819.1-P	Field mustard	nucleus	39.62	36.36
CDY52162	Canola	nucleus	39.62	36.36
GSMUA_Achr4P07170_001	Banana	nucleus	34.43	36.32
Zm00001d021934_P001	Maize	nucleus	39.62	35.9
GSMUA_Achr8P31170_001	Banana	nucleus	34.91	35.41
TraesCS2D01G199200.1	Wheat	nucleus	39.62	35.29
TraesCS2A01G188500.1	Wheat	nucleus	39.15	34.87
TraesCS2B01G218800.1	Wheat	nucleus	39.15	34.87
HORVU2Hr1G092300.1	Barley	nucleus	22.17	34.81
EER97443	Sorghum	nucleus	37.74	34.63
TraesCS2B01G405700.1	Wheat	nucleus	35.85	34.39
Zm00001d006687_P001	Maize	nucleus	35.85	34.23
Os07t0581700-01	Rice	nucleus	38.68	34.17
EER92693	Sorghum	nucleus	38.21	33.47
Zm00001d028129_P002	Maize	nucleus, plastid	37.26	33.05
HORVU4Hr1G070610.1	Barley	nucleus	35.38	32.75
TraesCS4A01G040600.1	Wheat	nucleus	35.38	32.47
TraesCS4B01G261600.1	Wheat	nucleus	35.38	32.19
TraesCSU01G009800.1	Wheat	nucleus	36.79	31.97
Os03t0198600-01	Rice	nucleus	35.85	31.8
TraesCS2D01G385500.1	Wheat	nucleus	36.79	31.58
HORVU2Hr1G092290.6	Barley	nucleus	33.96	30.9
TraesCS4D01G261600.1	Wheat	nucleus	33.96	30.77
Zm00001d048172_P001	Maize	nucleus	33.96	30.77
GSMUA_Achr4P14070_001	Banana	plastid	36.79	26.62

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100803948	MapMan:15.5.3.1	EMBL:ACUP02000739	ncoils:Coil	EnsemblPlantsGene:GLYMA_02G058900
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom
InterPro:IPR001356	UniProt:K7K6N9	EnsemblPlants:KRH69950	ProteinID:KRH69950	ProteinID:KRH69950.1	PFAM:PF00046
ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF281	SMART:SM00389	SUPFAM:SSF46689
UniParc:UPI0002337165	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:5282723..5284728

Molecular Weight (calculated)

25016.5 Da

IEP (calculated)

6.110

GRAVY (calculated)

-1.017

Length

212 amino acids

Sequence
(BLAST)

001: MNHQLIEDHM MLFPWLCPGG AFTEVTPQQG ENNKPRHKRN RKNRGGENGT IITKKRKLTV EQISLLERNF SNEHKLESER KDQLALELSL DPRQVAVWFQ
101: NRRSRWKTQK LEEEYSNLKN VHETTMLDKC HLENEVLKLK EQLLETKKEI EQLLERGEKA PSNNSSSSQS MEEAVNPPFL GEFRVEEYDD GDVFYIPETH
201: HINGMEWINL YN

Best Arabidopsis Sequence Match ( AT4G36740.2 )
(BLAST)

001: MNYTVDDQNM AFISQLYPDV YTQIVQPVGE VKQPKRRRKK TKGSVASADG GNGLFRKRKL TDEQVNMLEM SFGDEHKLES ERKDRLAAEL GLDPRQVAVW
101: FQNRRARWKN KRLEEEYNKL KNSHDNVVVD KCRLESEVIQ LKEQLYDAER EIQRLAERVE GGSSNSPISS SVSVEANETP FFGDYKVGDD GDDYDHLFYP
201: VPENSYIDEA EWMSLYI

Arabidopsis Description

HB-5homeobox protein 40 [Source:TAIR;Acc:AT4G36740]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.