Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY24769 | Canola | nucleus | 93.37 | 76.82 |
| AT4G36740.2 | Thale cress | nucleus | 71.27 | 59.45 |
| Bra017780.1-P | Field mustard | nucleus | 69.61 | 58.06 |
| Bra040941.1-P | Field mustard | nucleus | 61.88 | 50.45 |
| Bra028099.1-P | Field mustard | nucleus | 58.01 | 47.73 |
| Solyc02g085630.2.1 | Tomato | nucleus | 50.83 | 43.4 |
| VIT_04s0023g01330.t01 | Wine grape | nucleus | 49.17 | 42.18 |
| KRH76853 | Soybean | nucleus | 48.62 | 41.12 |
| PGSC0003DMT400033036 | Potato | nucleus | 48.62 | 41.12 |
| PGSC0003DMT400011464 | Potato | nucleus | 46.96 | 40.67 |
| Solyc02g062960.2.1 | Tomato | nucleus | 45.3 | 40.0 |
| KRH28621 | Soybean | nucleus | 46.41 | 39.07 |
| Solyc03g034120.2.1 | Tomato | nucleus | 42.54 | 37.38 |
| KRH69950 | Soybean | nucleus | 41.99 | 35.85 |
| PGSC0003DMT400045834 | Potato | nucleus | 41.44 | 35.55 |
| PGSC0003DMT400045855 | Potato | nucleus | 39.23 | 33.33 |
| PGSC0003DMT400050373 | Potato | nucleus | 29.83 | 32.73 |
| Solyc03g034130.2.1 | Tomato | nucleus | 40.33 | 32.59 |
| Solyc03g034110.2.1 | Tomato | nucleus | 38.12 | 32.39 |
| Solyc03g034150.1.1 | Tomato | nucleus | 35.91 | 32.18 |
| Bra012093.1-P | Field mustard | nucleus | 38.67 | 31.25 |
| Bra037154.1-P | Field mustard | nucleus | 38.67 | 31.11 |
| PGSC0003DMT400045832 | Potato | nucleus | 39.78 | 31.03 |
| GSMUA_Achr1P22640_001 | Banana | nucleus | 30.94 | 30.77 |
| Bra031819.1-P | Field mustard | nucleus | 38.67 | 30.3 |
| GSMUA_Achr7P25990_001 | Banana | nucleus | 25.41 | 30.26 |
| TraesCS2B01G405700.1 | Wheat | nucleus | 35.36 | 28.96 |
| GSMUA_Achr4P07170_001 | Banana | nucleus | 30.94 | 27.86 |
| GSMUA_Achr8P31170_001 | Banana | nucleus | 30.39 | 26.32 |
| HORVU2Hr1G036680.2 | Barley | nucleus | 34.25 | 26.27 |
| TraesCS2B01G218800.1 | Wheat | nucleus | 34.25 | 26.05 |
| TraesCS2D01G199200.1 | Wheat | nucleus | 34.25 | 26.05 |
| EER97443 | Sorghum | nucleus | 32.6 | 25.54 |
| TraesCS2D01G385500.1 | Wheat | nucleus | 34.81 | 25.51 |
| Os07t0581700-01 | Rice | nucleus | 33.7 | 25.42 |
| TraesCSU01G009800.1 | Wheat | nucleus | 34.25 | 25.41 |
| Zm00001d021934_P001 | Maize | nucleus | 32.6 | 25.21 |
| TraesCS2A01G188500.1 | Wheat | nucleus | 33.15 | 25.21 |
| Os03t0198600-01 | Rice | nucleus | 32.6 | 24.69 |
| TraesCS4B01G261600.1 | Wheat | nucleus | 31.49 | 24.46 |
| TraesCS4D01G261600.1 | Wheat | nucleus | 31.49 | 24.36 |
| Zm00001d006687_P001 | Maize | nucleus | 29.83 | 24.32 |
| Bra024665.1-P | Field mustard | nucleus | 24.86 | 24.19 |
| HORVU4Hr1G070610.1 | Barley | nucleus | 30.39 | 24.02 |
| TraesCS4A01G040600.1 | Wheat | nucleus | 30.39 | 23.81 |
| EER92693 | Sorghum | nucleus | 30.94 | 23.14 |
| Zm00001d028129_P002 | Maize | nucleus, plastid | 29.28 | 22.18 |
| Zm00001d048172_P001 | Maize | nucleus | 28.18 | 21.79 |
| GSMUA_Achr4P14070_001 | Banana | plastid | 31.49 | 19.45 |
| HORVU2Hr1G092290.6 | Barley | nucleus | 24.86 | 19.31 |
| HORVU2Hr1G092300.1 | Barley | nucleus | 14.36 | 19.26 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:35.1 | EnsemblPlantsGene:Bra010573 | EnsemblPlants:Bra010573.1 | EnsemblPlants:Bra010573.1-P | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | InterPro:Homeobox-like_sf | InterPro:Homeobox_dom | InterPro:IPR001356 | UniProt:M4D273 |
| PFAM:PF00046 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF281 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI00025461D2 |
| SEG:seg | : | : | : | : | : |
Description
AT4G36740 (E=8e-033) HB-5, ATHB40 | ATHB40 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 40); DNA binding / transcription factor
Coordinates
chrA08:-:15259579..15260765
Molecular Weight (calculated)
20755.3 Da
IEP (calculated)
4.677
GRAVY (calculated)
-0.774
Length
181 amino acids
Sequence
(BLAST)
(BLAST)
001: MNPTVSDHNM AFISQLYPDV YTHIVPQGEV KPPKRRRKKS KRAVAAGDGS NCLFKKRKLT DEQMNMLEMS FCDEHKLESE RKDKLAAELG LDPRQVAVLQ
101: LKEQLFDAER EIQRLAERVE GGSGNSPVSS SVSIEHNETS FFGDYKVEED GDDYDNMVYP VPENSYMDGE EWINYQLNVI F
101: LKEQLFDAER EIQRLAERVE GGSGNSPVSS SVSIEHNETS FFGDYKVEED GDDYDNMVYP VPENSYMDGE EWINYQLNVI F
001: MNYTVDDQNM AFISQLYPDV YTQIVQPGEV KQPKRRRKKT KGSVASADGG NGLFRKRKLT DEQVNMLEMS FGDEHKLESE RKDRLAAELG LDPRQVAVWF
101: QNRRARWKNK RLEEEYNKLK NSHDNVVVDK CRLESEVIQL KEQLYDAERE IQRLAERVEG GSSNSPISSS VSVEANETPF FGDYKVGDDG DDYDHLFYPV
201: PENSYIDEAE WMSLYI
101: QNRRARWKNK RLEEEYNKLK NSHDNVVVDK CRLESEVIQL KEQLYDAERE IQRLAERVEG GSSNSPISSS VSVEANETPF FGDYKVGDDG DDYDHLFYPV
201: PENSYIDEAE WMSLYI
Arabidopsis Description
HB-5homeobox protein 40 [Source:TAIR;Acc:AT4G36740]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.