Factsheet for Bra037154.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57132	Canola	nucleus	96.44	96.44
Bra012093.1-P	Field mustard	nucleus	80.89	81.25
Bra031819.1-P	Field mustard	nucleus	76.44	74.46
AT5G66700.1	Thale cress	nucleus	71.56	70.61
Solyc02g062960.2.1	Tomato	nucleus	43.56	47.8
Solyc02g085630.2.1	Tomato	nucleus	44.89	47.64
KRH76853	Soybean	nucleus	44.89	47.2
PGSC0003DMT400011464	Potato	nucleus	43.56	46.89
VIT_04s0023g01330.t01	Wine grape	nucleus	43.11	45.97
PGSC0003DMT400033036	Potato	nucleus	43.56	45.79
Bra017780.1-P	Field mustard	nucleus	44.0	45.62
KRH28621	Soybean	nucleus	43.56	45.58
Solyc03g034120.2.1	Tomato	nucleus	41.33	45.15
PGSC0003DMT400045834	Potato	nucleus	42.22	45.02
GSMUA_Achr7P25990_001	Banana	nucleus	29.78	44.08
Bra040941.1-P	Field mustard	nucleus	43.11	43.69
PGSC0003DMT400045855	Potato	nucleus	40.89	43.19
Solyc03g034110.2.1	Tomato	nucleus	40.44	42.72
Solyc03g034130.2.1	Tomato	nucleus	42.22	42.41
KRH69950	Soybean	nucleus	38.67	41.04
Bra028099.1-P	Field mustard	nucleus	40.0	40.91
PGSC0003DMT400050373	Potato	nucleus	28.89	39.39
GSMUA_Achr1P22640_001	Banana	nucleus	31.56	39.01
Bra010573.1-P	Field mustard	nucleus	31.11	38.67
Solyc03g034150.1.1	Tomato	nucleus	34.67	38.61
PGSC0003DMT400045832	Potato	nucleus	39.11	37.93
HORVU2Hr1G092300.1	Barley	nucleus	22.22	37.04
Zm00001d006687_P001	Maize	nucleus	33.33	33.78
EER97443	Sorghum	nucleus	34.67	33.77
HORVU2Hr1G036680.2	Barley	nucleus	34.67	33.05
Zm00001d021934_P001	Maize	nucleus	34.22	32.91
GSMUA_Achr8P31170_001	Banana	nucleus	30.22	32.54
TraesCS2B01G405700.1	Wheat	nucleus	31.56	32.13
TraesCS2D01G199200.1	Wheat	nucleus	33.78	31.93
TraesCS2B01G218800.1	Wheat	nucleus	33.78	31.93
Os03t0198600-01	Rice	nucleus	33.78	31.8
Os07t0581700-01	Rice	nucleus	33.78	31.67
TraesCS2A01G188500.1	Wheat	nucleus	33.33	31.51
GSMUA_Achr4P07170_001	Banana	nucleus	28.0	31.34
HORVU4Hr1G070610.1	Barley	nucleus	31.56	31.0
TraesCS4B01G261600.1	Wheat	nucleus	31.56	30.47
TraesCSU01G009800.1	Wheat	nucleus	32.89	30.33
EER92693	Sorghum	nucleus	32.44	30.17
Zm00001d028129_P002	Maize	nucleus, plastid	32.0	30.13
Bra024665.1-P	Field mustard	nucleus	24.89	30.11
HORVU2Hr1G092290.6	Barley	nucleus	31.11	30.04
TraesCS2D01G385500.1	Wheat	nucleus	32.89	29.96
TraesCS4D01G261600.1	Wheat	nucleus	31.11	29.91
TraesCS4A01G040600.1	Wheat	nucleus	30.22	29.44
Zm00001d048172_P001	Maize	nucleus	29.78	28.63
GSMUA_Achr4P14070_001	Banana	plastid	35.11	26.96

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	EnsemblPlantsGene:Bra037154	EnsemblPlants:Bra037154.1	EnsemblPlants:Bra037154.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	UniProt:M4F7U3	PFAM:PF00046	PRINTS:PR00031	ScanProsite:PS00027
PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF281	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI0002541CAC
SEG:seg	:	:	:	:	:

Description

AT5G66700 (E=3e-083) HB53, HB-8, ATHB53 | HB53; DNA binding / transcription factor

Coordinates

chrA09:+:4231303..4232421

Molecular Weight (calculated)

25963.5 Da

IEP (calculated)

6.152

GRAVY (calculated)

-0.800

Length

225 amino acids

Sequence
(BLAST)

001: MDQMVLGSQV YPYTTQTHSQ CIIVNQIDGA PSGDGSKPVK RRRKRRSKGS SATNEDDVAS IGALLRKRKV TDEQMNMLEY SFENEHKLES GRKEKIAREL
101: GLDPRQVAVW FQNRRARWKN KKLEEEYAKL KSQHDTVLLG QSHLESQVLI LTEQLTEAQN EIQKLSERLV QETSTNSSSS SLSVEANYAP IEFEFAPVDT
201: NYNIPFYMMD NNYLQNMEYW DGLYV

Best Arabidopsis Sequence Match ( AT5G66700.1 )
(BLAST)

001: MDHGRLMDDQ MMLGSQVYPY TTQPQNSHCI IVNQIDGGEE SKPVKRRRKR RSKGSSATNE EDVAEIGGML RKRKLTDEQV NMLEYSFGNE HKLESGRKEK
101: IAGELGLDPR QVAVWFQNRR ARWKNKKLEE EYAKLKNHHD NVVLGQCQLE SQILKLTEQL SEAQSEIRKL SERLEEMPTN SSSSSLSVEA NNAPTDFELA
201: PETNYNIPFY MLDNNYLQSM EYWDGLYV

Arabidopsis Description

ATHB-53Homeobox-leucine zipper protein ATHB-53 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVR0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.