Factsheet for PGSC0003DMT400045855

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g034130.2.1	Tomato	nucleus	91.55	87.05
Solyc03g034110.2.1	Tomato	nucleus	86.39	86.39
PGSC0003DMT400045834	Potato	nucleus	80.75	81.52
PGSC0003DMT400045832	Potato	nucleus	80.28	73.71
PGSC0003DMT400011464	Potato	nucleus	54.46	55.5
PGSC0003DMT400033036	Potato	nucleus	54.93	54.67
PGSC0003DMT400050373	Potato	nucleus	42.25	54.55
VIT_04s0023g01330.t01	Wine grape	nucleus	51.17	51.66
KRH28621	Soybean	nucleus	52.11	51.63
KRH76853	Soybean	nucleus	50.7	50.47
CDX69241	Canola	nucleus	47.89	47.0
CDY67008	Canola	nucleus	36.15	46.67
CDX75593	Canola	nucleus	47.42	46.54
AT4G36740.2	Thale cress	nucleus	47.42	46.54
Bra017780.1-P	Field mustard	nucleus	46.95	46.08
CDX72601	Canola	nucleus	46.95	46.08
AT2G18550.1	Thale cress	nucleus	46.48	45.0
CDY24769	Canola	nucleus	46.01	44.55
GSMUA_Achr7P25990_001	Banana	nucleus	31.46	44.08
Bra040941.1-P	Field mustard	nucleus	45.54	43.69
CDY30312	Canola	nucleus	45.54	43.5
CDY68376	Canola	nucleus	45.07	43.24
CDY35477	Canola	nucleus	44.6	43.18
KRH69950	Soybean	nucleus	42.72	42.92
CDY57132	Canola	nucleus	45.07	42.67
CDX81374	Canola	nucleus	44.6	42.41
AT5G66700.1	Thale cress	nucleus	45.07	42.11
CDY30761	Canola	nucleus	44.13	41.96
GSMUA_Achr1P22640_001	Banana	nucleus	35.68	41.76
Bra031819.1-P	Field mustard	nucleus	45.07	41.56
CDY52162	Canola	nucleus	45.07	41.56
CDY70377	Canola	nucleus	43.19	41.07
Bra012093.1-P	Field mustard	nucleus	43.19	41.07
Bra028099.1-P	Field mustard	nucleus	42.25	40.91
Bra037154.1-P	Field mustard	nucleus	43.19	40.89
Bra010573.1-P	Field mustard	nucleus	33.33	39.23
GSMUA_Achr8P31170_001	Banana	nucleus	37.09	37.8
HORVU2Hr1G092300.1	Barley	nucleus	22.54	35.56
TraesCS2B01G405700.1	Wheat	nucleus	36.62	35.29
GSMUA_Achr4P07170_001	Banana	nucleus	32.86	34.83
HORVU2Hr1G036680.2	Barley	nucleus	38.5	34.75
Zm00001d021934_P001	Maize	nucleus	38.03	34.62
Zm00001d006687_P001	Maize	nucleus	35.68	34.23
EER97443	Sorghum	nucleus	37.09	34.2
Os07t0581700-01	Rice	nucleus	38.5	34.17
TraesCS2A01G188500.1	Wheat	nucleus	36.62	32.77
TraesCS2D01G199200.1	Wheat	nucleus	36.62	32.77
TraesCS2B01G218800.1	Wheat	nucleus	36.15	32.35
TraesCS2D01G385500.1	Wheat	nucleus	35.68	30.77
TraesCSU01G009800.1	Wheat	nucleus	35.21	30.74
Zm00001d048172_P001	Maize	nucleus	33.33	30.34
HORVU2Hr1G092290.6	Barley	nucleus	32.86	30.04
Os03t0198600-01	Rice	nucleus	33.33	29.71
HORVU4Hr1G070610.1	Barley	nucleus	31.92	29.69
Zm00001d028129_P002	Maize	nucleus, plastid	32.86	29.29
TraesCS4B01G261600.1	Wheat	nucleus	31.92	29.18
TraesCS4D01G261600.1	Wheat	nucleus	31.92	29.06
TraesCS4A01G040600.1	Wheat	nucleus	31.46	29.0
EER92693	Sorghum	nucleus	32.86	28.93
GSMUA_Achr4P14070_001	Banana	plastid	36.15	26.28

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102605294	MapMan:15.5.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356
UniProt:M1BIA9	PFAM:PF00046	EnsemblPlantsGene:PGSC0003DMG400017787	PGSC:PGSC0003DMG400017787	EnsemblPlants:PGSC0003DMT400045855	PRINTS:PR00031
ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF281	SMART:SM00389	SUPFAM:SSF46689
UniParc:UPI0002957B1E	RefSeq:XP_006366987.1	SEG:seg	:	:	:

Description

Homeobox protein [Source:PGSC_GENE;Acc:PGSC0003DMG400017787]

Coordinates

chr3:+:4413342..4414434

Molecular Weight (calculated)

25289.1 Da

IEP (calculated)

8.907

GRAVY (calculated)

-0.962

Length

213 amino acids

Sequence
(BLAST)

001: MTGNKVDDQM ELISHFYPQI YSQLAQQQEE TVKPRRRRKR NKVEGRNNTS EVVMRKRKLL SEEQVNLLER SFGDQHKLET ERKAKLASEL GLDPHQVAVW
101: FQNRRARWKN KKLEEEYSKL KTQHEDTIIE KYRLEAEVLK MKDQLCEAKK KIERLLLERK IDISSNNSPT SSIFSMEQSH FSLGEFGMEG QLMDDSMLFV
201: ADYQSNYVTL WDN

Best Arabidopsis Sequence Match ( AT2G18550.1 )
(BLAST)

001: MNNQNVDDHN LLLISQLYPN VYTPLVPQQG GEAKPTRRRK RKSKSVVVAE EGENEGNGWF RKRKLSDEQV RMLEISFEDD HKLESERKDR LASELGLDPR
101: QVAVWFQNRR ARWKNKRVED EYTKLKNAYE TTVVEKCRLD SEVIHLKEQL YEAEREIQRL AKRVEGTLSN SPISSSVTIE ANHTTPFFGD YDIGFDGEAD
201: ENLLYSPDYI DGLDWMSQFM

Arabidopsis Description

ATHB-21Homeobox-leucine zipper protein ATHB-21 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU70]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.