Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G385500.1 | Wheat | nucleus | 91.4 | 81.78 |
| TraesCSU01G009800.1 | Wheat | nucleus | 85.07 | 77.05 |
| TraesCS2B01G218800.1 | Wheat | nucleus | 73.76 | 68.49 |
| HORVU2Hr1G092290.6 | Barley | nucleus | 62.44 | 59.23 |
| Zm00001d021934_P001 | Maize | nucleus | 61.09 | 57.69 |
| Zm00001d006687_P001 | Maize | nucleus | 57.92 | 57.66 |
| EER97443 | Sorghum | nucleus | 60.18 | 57.58 |
| Os07t0581700-01 | Rice | nucleus | 61.09 | 56.25 |
| HORVU2Hr1G092300.1 | Barley | nucleus | 31.22 | 51.11 |
| GSMUA_Achr7P25990_001 | Banana | nucleus | 31.22 | 45.39 |
| GSMUA_Achr1P22640_001 | Banana | nucleus | 37.1 | 45.05 |
| TraesCS4B01G261600.1 | Wheat | nucleus | 44.8 | 42.49 |
| GSMUA_Achr4P07170_001 | Banana | nucleus | 38.46 | 42.29 |
| Bra040941.1-P | Field mustard | nucleus | 40.72 | 40.54 |
| CDY68376 | Canola | nucleus | 40.72 | 40.54 |
| CDY30312 | Canola | nucleus | 40.72 | 40.36 |
| Solyc02g085630.2.1 | Tomato | nucleus | 38.46 | 40.09 |
| CDY24769 | Canola | nucleus | 38.91 | 39.09 |
| KRH28621 | Soybean | nucleus | 38.01 | 39.07 |
| PGSC0003DMT400045834 | Potato | nucleus | 37.1 | 38.86 |
| CDY67008 | Canola | nucleus | 28.96 | 38.79 |
| PGSC0003DMT400011464 | Potato | nucleus | 36.65 | 38.76 |
| CDX69241 | Canola | nucleus | 38.01 | 38.71 |
| AT4G36740.2 | Thale cress | nucleus | 38.01 | 38.71 |
| CDY35477 | Canola | nucleus | 38.46 | 38.64 |
| VIT_04s0023g01330.t01 | Wine grape | nucleus | 36.65 | 38.39 |
| Solyc03g034120.2.1 | Tomato | nucleus | 35.75 | 38.35 |
| PGSC0003DMT400033036 | Potato | nucleus | 37.1 | 38.32 |
| CDX75593 | Canola | nucleus | 37.56 | 38.25 |
| Bra028099.1-P | Field mustard | nucleus | 38.01 | 38.18 |
| Solyc02g062960.2.1 | Tomato | nucleus | 34.84 | 37.56 |
| PGSC0003DMT400045855 | Potato | nucleus | 35.29 | 36.62 |
| KRH76853 | Soybean | nucleus | 35.29 | 36.45 |
| CDX72601 | Canola | nucleus | 35.75 | 36.41 |
| GSMUA_Achr8P31170_001 | Banana | nucleus | 34.39 | 36.36 |
| Bra017780.1-P | Field mustard | nucleus | 35.29 | 35.94 |
| AT2G18550.1 | Thale cress | nucleus | 35.75 | 35.91 |
| KRH69950 | Soybean | nucleus | 34.39 | 35.85 |
| Solyc03g034110.2.1 | Tomato | nucleus | 34.39 | 35.68 |
| Bra010573.1-P | Field mustard | nucleus | 28.96 | 35.36 |
| PGSC0003DMT400050373 | Potato | nucleus | 26.24 | 35.15 |
| Solyc03g034130.2.1 | Tomato | nucleus | 35.29 | 34.82 |
| Solyc03g034150.1.1 | Tomato | nucleus | 31.22 | 34.16 |
| PGSC0003DMT400045832 | Potato | nucleus | 35.75 | 34.05 |
| CDX81374 | Canola | nucleus | 33.94 | 33.48 |
| CDY70377 | Canola | nucleus | 33.94 | 33.48 |
| Bra012093.1-P | Field mustard | nucleus | 33.94 | 33.48 |
| CDY30761 | Canola | nucleus | 33.48 | 33.04 |
| Bra031819.1-P | Field mustard | nucleus | 33.48 | 32.03 |
| CDY52162 | Canola | nucleus | 33.48 | 32.03 |
| AT5G66700.1 | Thale cress | nucleus | 33.03 | 32.02 |
| CDY57132 | Canola | nucleus | 32.58 | 32.0 |
| Bra037154.1-P | Field mustard | nucleus | 32.13 | 31.56 |
| GSMUA_Achr4P14070_001 | Banana | plastid | 38.01 | 28.67 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom |
| InterPro:IPR001356 | PFAM:PF00046 | PRINTS:PR00031 | ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 |
| PANTHER:PTHR24326:SF281 | SMART:SM00389 | SUPFAM:SSF46689 | EnsemblPlantsGene:TraesCS2B01G405700 | EnsemblPlants:TraesCS2B01G405700.1 | TIGR:cd00086 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr2B:+:573974813..573975706
Molecular Weight (calculated)
24268.4 Da
IEP (calculated)
7.926
GRAVY (calculated)
-0.790
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNQQLFGSS YVDAPFFAAN GTAQRESQPK ARRRRRKAAR CGGGDGNGGE MDGGGDPKKR RLTDEQAEML ELSFREERKL ETGRKVYLAA ELGLDPKQVA
101: VWFQNRRARH KSKTLEQEFT RLKHAHDADI LHKCHLQNEV LRLKERLRAT EEEVQRLRSA AGSHGASGDG GDAAGAVSVC GGSPGSSFST GTWQQHLGFS
201: GANELGTDDD LMMCVPDCFF A
101: VWFQNRRARH KSKTLEQEFT RLKHAHDADI LHKCHLQNEV LRLKERLRAT EEEVQRLRSA AGSHGASGDG GDAAGAVSVC GGSPGSSFST GTWQQHLGFS
201: GANELGTDDD LMMCVPDCFF A
001: MNNQNVDDHN LLLISQLYPN VYTPLVPQQG GEAKPTRRRK RKSKSVVVAE EGENEGNGWF RKRKLSDEQV RMLEISFEDD HKLESERKDR LASELGLDPR
101: QVAVWFQNRR ARWKNKRVED EYTKLKNAYE TTVVEKCRLD SEVIHLKEQL YEAEREIQRL AKRVEGTLSN SPISSSVTIE ANHTTPFFGD YDIGFDGEAD
201: ENLLYSPDYI DGLDWMSQFM
101: QVAVWFQNRR ARWKNKRVED EYTKLKNAYE TTVVEKCRLD SEVIHLKEQL YEAEREIQRL AKRVEGTLSN SPISSSVTIE ANHTTPFFGD YDIGFDGEAD
201: ENLLYSPDYI DGLDWMSQFM
Arabidopsis Description
ATHB-21Homeobox-leucine zipper protein ATHB-21 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU70]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.