Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g034150.1.1 | Tomato | nucleus | 69.09 | 56.44 |
| PGSC0003DMT400045834 | Potato | nucleus | 55.76 | 43.6 |
| PGSC0003DMT400033036 | Potato | nucleus | 55.76 | 42.99 |
| PGSC0003DMT400045855 | Potato | nucleus | 54.55 | 42.25 |
| PGSC0003DMT400011464 | Potato | nucleus | 52.12 | 41.15 |
| CDX75593 | Canola | nucleus | 51.52 | 39.17 |
| CDX69241 | Canola | nucleus | 50.91 | 38.71 |
| VIT_04s0023g01330.t01 | Wine grape | nucleus | 49.09 | 38.39 |
| CDX72601 | Canola | nucleus | 49.09 | 37.33 |
| AT2G18550.1 | Thale cress | nucleus | 49.7 | 37.27 |
| KRH76853 | Soybean | nucleus | 47.88 | 36.92 |
| Bra017780.1-P | Field mustard | nucleus | 47.88 | 36.41 |
| AT4G36740.2 | Thale cress | nucleus | 47.27 | 35.94 |
| CDY35477 | Canola | nucleus | 47.88 | 35.91 |
| KRH28621 | Soybean | nucleus | 46.67 | 35.81 |
| GSMUA_Achr1P22640_001 | Banana | nucleus | 39.39 | 35.71 |
| CDY24769 | Canola | nucleus | 47.27 | 35.45 |
| PGSC0003DMT400045832 | Potato | nucleus | 49.7 | 35.34 |
| Bra040941.1-P | Field mustard | nucleus | 47.27 | 35.14 |
| CDY68376 | Canola | nucleus | 47.27 | 35.14 |
| CDY30312 | Canola | nucleus | 47.27 | 34.98 |
| CDY67008 | Canola | nucleus | 33.94 | 33.94 |
| Bra028099.1-P | Field mustard | nucleus | 44.85 | 33.64 |
| KRH69950 | Soybean | nucleus | 41.21 | 32.08 |
| GSMUA_Achr8P31170_001 | Banana | nucleus | 40.61 | 32.06 |
| Bra012093.1-P | Field mustard | nucleus | 41.82 | 30.8 |
| CDY70377 | Canola | nucleus | 41.82 | 30.8 |
| CDY30761 | Canola | nucleus | 41.21 | 30.36 |
| CDX81374 | Canola | nucleus | 40.61 | 29.91 |
| GSMUA_Achr4P07170_001 | Banana | nucleus | 36.36 | 29.85 |
| Bra010573.1-P | Field mustard | nucleus | 32.73 | 29.83 |
| GSMUA_Achr7P25990_001 | Banana | nucleus | 27.27 | 29.61 |
| AT5G66700.1 | Thale cress | nucleus | 40.0 | 28.95 |
| Bra037154.1-P | Field mustard | nucleus | 39.39 | 28.89 |
| HORVU2Hr1G092300.1 | Barley | nucleus | 23.64 | 28.89 |
| CDY57132 | Canola | nucleus | 39.39 | 28.89 |
| Bra031819.1-P | Field mustard | nucleus | 39.39 | 28.14 |
| CDY52162 | Canola | nucleus | 39.39 | 28.14 |
| Zm00001d028129_P002 | Maize | nucleus, plastid | 38.18 | 26.36 |
| TraesCS2B01G405700.1 | Wheat | nucleus | 35.15 | 26.24 |
| Zm00001d006687_P001 | Maize | nucleus | 35.15 | 26.13 |
| TraesCS4A01G040600.1 | Wheat | nucleus | 35.76 | 25.54 |
| Os03t0198600-01 | Rice | nucleus | 36.97 | 25.52 |
| Os07t0581700-01 | Rice | nucleus | 36.97 | 25.42 |
| TraesCS2B01G218800.1 | Wheat | nucleus | 36.36 | 25.21 |
| HORVU2Hr1G036680.2 | Barley | nucleus | 35.76 | 25.0 |
| TraesCS2D01G199200.1 | Wheat | nucleus | 35.76 | 24.79 |
| TraesCS2A01G188500.1 | Wheat | nucleus | 35.76 | 24.79 |
| TraesCS4D01G261600.1 | Wheat | nucleus | 35.15 | 24.79 |
| TraesCS4B01G261600.1 | Wheat | nucleus | 34.55 | 24.46 |
| HORVU4Hr1G070610.1 | Barley | nucleus | 33.94 | 24.45 |
| EER92693 | Sorghum | nucleus | 35.76 | 24.38 |
| EER97443 | Sorghum | nucleus | 33.94 | 24.24 |
| Zm00001d021934_P001 | Maize | nucleus | 33.94 | 23.93 |
| TraesCS2D01G385500.1 | Wheat | nucleus | 35.76 | 23.89 |
| Zm00001d048172_P001 | Maize | nucleus | 32.73 | 23.08 |
| TraesCSU01G009800.1 | Wheat | nucleus | 33.94 | 22.95 |
| HORVU2Hr1G092290.6 | Barley | nucleus | 31.52 | 22.32 |
| GSMUA_Achr4P14070_001 | Banana | plastid | 36.97 | 20.82 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | UniProt:M1BQ70 |
| PFAM:PF00046 | EnsemblPlantsGene:PGSC0003DMG400019580 | PGSC:PGSC0003DMG400019580 | EnsemblPlants:PGSC0003DMT400050373 | PRINTS:PR00031 | ScanProsite:PS00027 |
| PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF281 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI00029570F9 |
Description
Homeobox-leucine zipper protein ATHB-40 [Source:PGSC_GENE;Acc:PGSC0003DMG400019580]
Coordinates
chr3:+:4642164..4646237
Molecular Weight (calculated)
19178.9 Da
IEP (calculated)
9.837
GRAVY (calculated)
-1.084
Length
165 amino acids
Sequence
(BLAST)
(BLAST)
001: MTHHQLDDHQ MVMISQYYTG INTQLVPDHQ GGVQPWRRRK KNKGETSSDE IVRKRKLSEE QVNLLERSFG DAHKLDMETK AKLASELGLD LQQVAVWFQN
101: RRARWKKKKI EDEYSKLKSQ HEITIVEKCR LETQSDDLLE PIGEGSPLPK SGTCPKAKRK EEAKK
101: RRARWKKKKI EDEYSKLKSQ HEITIVEKCR LETQSDDLLE PIGEGSPLPK SGTCPKAKRK EEAKK
001: MNNQNVDDHN LLLISQLYPN VYTPLVPQQG GEAKPTRRRK RKSKSVVVAE EGENEGNGWF RKRKLSDEQV RMLEISFEDD HKLESERKDR LASELGLDPR
101: QVAVWFQNRR ARWKNKRVED EYTKLKNAYE TTVVEKCRLD SEVIHLKEQL YEAEREIQRL AKRVEGTLSN SPISSSVTIE ANHTTPFFGD YDIGFDGEAD
201: ENLLYSPDYI DGLDWMSQFM
101: QVAVWFQNRR ARWKNKRVED EYTKLKNAYE TTVVEKCRLD SEVIHLKEQL YEAEREIQRL AKRVEGTLSN SPISSSVTIE ANHTTPFFGD YDIGFDGEAD
201: ENLLYSPDYI DGLDWMSQFM
Arabidopsis Description
ATHB-21Homeobox-leucine zipper protein ATHB-21 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU70]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.