Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G218800.1 | Wheat | nucleus | 93.28 | 93.28 |
| TraesCS2A01G188500.1 | Wheat | nucleus | 93.28 | 93.28 |
| HORVU2Hr1G036680.2 | Barley | nucleus | 89.5 | 90.25 |
| Os07t0581700-01 | Rice | nucleus | 68.49 | 67.92 |
| TraesCS2D01G385500.1 | Wheat | nucleus | 68.91 | 66.4 |
| Zm00001d021934_P001 | Maize | nucleus | 64.71 | 65.81 |
| EER97443 | Sorghum | nucleus | 63.87 | 65.8 |
| Zm00001d006687_P001 | Maize | nucleus | 59.66 | 63.96 |
| GSMUA_Achr7P25990_001 | Banana | nucleus | 34.03 | 53.29 |
| GSMUA_Achr4P07170_001 | Banana | nucleus | 43.28 | 51.24 |
| GSMUA_Achr1P22640_001 | Banana | nucleus | 37.82 | 49.45 |
| CDY67008 | Canola | nucleus | 30.67 | 44.24 |
| TraesCS4D01G261600.1 | Wheat | nucleus | 42.86 | 43.59 |
| GSMUA_Achr8P31170_001 | Banana | nucleus | 38.24 | 43.54 |
| PGSC0003DMT400033036 | Potato | nucleus | 38.24 | 42.52 |
| Solyc02g085630.2.1 | Tomato | nucleus | 37.82 | 42.45 |
| VIT_04s0023g01330.t01 | Wine grape | nucleus | 37.4 | 42.18 |
| Solyc02g062960.2.1 | Tomato | nucleus | 35.29 | 40.98 |
| KRH28621 | Soybean | nucleus | 36.97 | 40.93 |
| PGSC0003DMT400011464 | Potato | nucleus | 35.71 | 40.67 |
| AT4G36740.2 | Thale cress | nucleus | 36.97 | 40.55 |
| CDX69241 | Canola | nucleus | 36.97 | 40.55 |
| Bra040941.1-P | Field mustard | nucleus | 37.82 | 40.54 |
| CDY30312 | Canola | nucleus | 37.82 | 40.36 |
| KRH76853 | Soybean | nucleus | 36.13 | 40.19 |
| CDX75593 | Canola | nucleus | 36.55 | 40.09 |
| CDY68376 | Canola | nucleus | 36.97 | 39.64 |
| KRH69950 | Soybean | nucleus | 35.29 | 39.62 |
| Bra028099.1-P | Field mustard | nucleus | 36.55 | 39.55 |
| PGSC0003DMT400045834 | Potato | nucleus | 34.45 | 38.86 |
| Solyc03g034120.2.1 | Tomato | nucleus | 33.61 | 38.84 |
| CDY24769 | Canola | nucleus | 35.71 | 38.64 |
| CDY35477 | Canola | nucleus | 35.29 | 38.18 |
| Bra017780.1-P | Field mustard | nucleus | 34.03 | 37.33 |
| CDY70377 | Canola | nucleus | 34.87 | 37.05 |
| Bra012093.1-P | Field mustard | nucleus | 34.87 | 37.05 |
| CDY30761 | Canola | nucleus | 34.87 | 37.05 |
| CDX81374 | Canola | nucleus | 34.87 | 37.05 |
| CDX72601 | Canola | nucleus | 33.61 | 36.87 |
| PGSC0003DMT400045855 | Potato | nucleus | 32.77 | 36.62 |
| Solyc03g034110.2.1 | Tomato | nucleus | 32.77 | 36.62 |
| AT2G18550.1 | Thale cress | nucleus | 33.61 | 36.36 |
| Solyc03g034130.2.1 | Tomato | nucleus | 34.03 | 36.16 |
| PGSC0003DMT400050373 | Potato | nucleus | 24.79 | 35.76 |
| AT5G66700.1 | Thale cress | nucleus | 34.03 | 35.53 |
| Bra031819.1-P | Field mustard | nucleus | 34.03 | 35.06 |
| CDY52162 | Canola | nucleus | 34.03 | 35.06 |
| PGSC0003DMT400045832 | Potato | nucleus | 34.03 | 34.91 |
| GSMUA_Achr4P14070_001 | Banana | plastid | 42.44 | 34.47 |
| Bra010573.1-P | Field mustard | nucleus | 26.05 | 34.25 |
| CDY57132 | Canola | nucleus | 32.35 | 34.22 |
| Solyc03g034150.1.1 | Tomato | nucleus | 28.99 | 34.16 |
| Bra037154.1-P | Field mustard | nucleus | 31.93 | 33.78 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom |
| InterPro:IPR001356 | PFAM:PF00046 | PRINTS:PR00031 | ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 |
| PANTHER:PTHR24326:SF281 | SMART:SM00389 | SUPFAM:SSF46689 | EnsemblPlantsGene:TraesCS2D01G199200 | EnsemblPlants:TraesCS2D01G199200.1 | TIGR:cd00086 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr2D:-:148855464..148856413
Molecular Weight (calculated)
25757.2 Da
IEP (calculated)
7.268
GRAVY (calculated)
-0.664
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKQQVFGSS YVDMPFFAAN GAATAQGESR PRARRRRRRA ARCGGGDGDG GEMDGGGDPK KRRLTDEQVH GLELSFREER KLETGRKVHL AAELGLDPKQ
101: VAVWFQNRRA RHKSKLMEEE FAKLKHAHDA AVLHKCHLEN EVLRLKERLG ATEEEVRRLR SAPGSHGASG DGGDAAGAVG ACGGSPSSSF STGTCQQHPG
201: FSGADVLGPD DDLMMCVPEY GGYADSSVVE WFSLYGLI
101: VAVWFQNRRA RHKSKLMEEE FAKLKHAHDA AVLHKCHLEN EVLRLKERLG ATEEEVRRLR SAPGSHGASG DGGDAAGAVG ACGGSPSSSF STGTCQQHPG
201: FSGADVLGPD DDLMMCVPEY GGYADSSVVE WFSLYGLI
001: MNYTVDDQNM AFISQLYPDV YTQIVQPGEV KQPKRRRKKT KGSVASADGG NGLFRKRKLT DEQVNMLEMS FGDEHKLESE RKDRLAAELG LDPRQVAVWF
101: QNRRARWKNK RLEEEYNKLK NSHDNVVVDK CRLESEVIQL KEQLYDAERE IQRLAERVEG GSSNSPISSS VSVEANETPF FGDYKVGDDG DDYDHLFYPV
201: PENSYIDEAE WMSLYI
101: QNRRARWKNK RLEEEYNKLK NSHDNVVVDK CRLESEVIQL KEQLYDAERE IQRLAERVEG GSSNSPISSS VSVEANETPF FGDYKVGDDG DDYDHLFYPV
201: PENSYIDEAE WMSLYI
Arabidopsis Description
HB-5homeobox protein 40 [Source:TAIR;Acc:AT4G36740]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.