Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY67008 | Canola | nucleus | 55.26 | 76.36 |
| CDY57132 | Canola | nucleus | 71.93 | 72.89 |
| Bra037154.1-P | Field mustard | nucleus | 70.61 | 71.56 |
| CDY52162 | Canola | nucleus | 71.49 | 70.56 |
| Bra031819.1-P | Field mustard | nucleus | 71.05 | 70.13 |
| CDY30761 | Canola | nucleus | 67.11 | 68.3 |
| Bra012093.1-P | Field mustard | nucleus | 66.67 | 67.86 |
| CDY70377 | Canola | nucleus | 66.67 | 67.86 |
| CDX81374 | Canola | nucleus | 66.23 | 67.41 |
| Solyc02g085630.2.1 | Tomato | nucleus | 46.93 | 50.47 |
| AT4G36740.2 | Thale cress | nucleus | 47.37 | 49.77 |
| KRH28621 | Soybean | nucleus | 46.49 | 49.3 |
| PGSC0003DMT400033036 | Potato | nucleus | 45.18 | 48.13 |
| Solyc02g062960.2.1 | Tomato | nucleus | 42.98 | 47.8 |
| KRH76853 | Soybean | nucleus | 44.74 | 47.66 |
| VIT_04s0023g01330.t01 | Wine grape | nucleus | 43.86 | 47.39 |
| PGSC0003DMT400011464 | Potato | nucleus | 42.98 | 46.89 |
| Solyc03g034120.2.1 | Tomato | nucleus | 42.11 | 46.6 |
| PGSC0003DMT400045834 | Potato | nucleus | 42.98 | 46.45 |
| AT2G18550.1 | Thale cress | nucleus | 44.74 | 46.36 |
| PGSC0003DMT400045855 | Potato | nucleus | 42.11 | 45.07 |
| GSMUA_Achr7P25990_001 | Banana | nucleus | 29.82 | 44.74 |
| Solyc03g034130.2.1 | Tomato | nucleus | 43.42 | 44.2 |
| Solyc03g034110.2.1 | Tomato | nucleus | 40.79 | 43.66 |
| Solyc03g034150.1.1 | Tomato | nucleus | 38.6 | 43.56 |
| KRH69950 | Soybean | nucleus | 39.91 | 42.92 |
| GSMUA_Achr1P22640_001 | Banana | nucleus | 32.89 | 41.21 |
| PGSC0003DMT400045832 | Potato | nucleus | 40.79 | 40.09 |
| PGSC0003DMT400050373 | Potato | nucleus | 28.95 | 40.0 |
| HORVU2Hr1G092300.1 | Barley | nucleus | 21.49 | 36.3 |
| EER97443 | Sorghum | nucleus | 35.96 | 35.5 |
| Zm00001d021934_P001 | Maize | nucleus | 36.4 | 35.47 |
| GSMUA_Achr8P31170_001 | Banana | nucleus | 32.46 | 35.41 |
| Zm00001d006687_P001 | Maize | nucleus | 34.21 | 35.14 |
| GSMUA_Achr4P07170_001 | Banana | nucleus | 30.7 | 34.83 |
| HORVU2Hr1G036680.2 | Barley | nucleus | 35.53 | 34.32 |
| Os07t0581700-01 | Rice | nucleus | 35.96 | 34.17 |
| TraesCS2B01G218800.1 | Wheat | nucleus | 35.53 | 34.03 |
| TraesCS2D01G199200.1 | Wheat | nucleus | 35.53 | 34.03 |
| HORVU4Hr1G070610.1 | Barley | nucleus | 33.77 | 33.62 |
| TraesCS2A01G188500.1 | Wheat | nucleus | 35.09 | 33.61 |
| Os03t0198600-01 | Rice | nucleus | 34.65 | 33.05 |
| TraesCS4B01G261600.1 | Wheat | nucleus | 33.77 | 33.05 |
| TraesCS2B01G405700.1 | Wheat | nucleus | 32.02 | 33.03 |
| TraesCS4D01G261600.1 | Wheat | nucleus | 33.33 | 32.48 |
| TraesCS4A01G040600.1 | Wheat | nucleus | 32.89 | 32.47 |
| EER92693 | Sorghum | nucleus | 33.33 | 31.41 |
| Zm00001d028129_P002 | Maize | nucleus, plastid | 32.89 | 31.38 |
| Zm00001d048172_P001 | Maize | nucleus | 32.02 | 31.2 |
| TraesCSU01G009800.1 | Wheat | nucleus | 33.33 | 31.15 |
| TraesCS2D01G385500.1 | Wheat | nucleus | 33.33 | 30.77 |
| HORVU2Hr1G092290.6 | Barley | nucleus | 31.14 | 30.47 |
| GSMUA_Achr4P14070_001 | Banana | plastid | 35.53 | 27.65 |
| AT1G27045.4 | Thale cress | nucleus | 27.63 | 25.0 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | EntrezGene:836803 | UniProt:A0A178ULJ9 | ProteinID:AED98253.1 | ArrayExpress:AT5G66700 |
| EnsemblPlantsGene:AT5G66700 | RefSeq:AT5G66700 | TAIR:AT5G66700 | RefSeq:AT5G66700-TAIR-G | EnsemblPlants:AT5G66700.1 | TAIR:AT5G66700.1 |
| EMBL:AY683477 | Unigene:At.51263 | ProteinID:BAA97276.1 | EMBL:BT024847 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009733 | GO:GO:0009987 |
| GO:GO:0043565 | GO:GO:0048364 | Symbol:HB53 | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS |
| InterPro:Homeobox_dom | InterPro:IPR001356 | RefSeq:NP_201471.1 | ProteinID:OAO93954.1 | PFAM:PF00046 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0004507 | PO:PO:0006085 |
| PO:PO:0007098 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0020100 | PO:PO:0025022 | PO:PO:0025181 | PO:PO:0025281 | PRINTS:PR00031 |
| ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF281 | UniProt:Q9LVR0 | SMART:SM00389 |
| SUPFAM:SSF46689 | UniParc:UPI00000A15AD | SEG:seg | : | : | : |
Description
ATHB-53Homeobox-leucine zipper protein ATHB-53 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVR0]
Coordinates
chr5:+:26634275..26635885
Molecular Weight (calculated)
26393.1 Da
IEP (calculated)
5.733
GRAVY (calculated)
-0.934
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MDHGRLMDDQ MMLGSQVYPY TTQPQNSHCI IVNQIDGGEE SKPVKRRRKR RSKGSSATNE EDVAEIGGML RKRKLTDEQV NMLEYSFGNE HKLESGRKEK
101: IAGELGLDPR QVAVWFQNRR ARWKNKKLEE EYAKLKNHHD NVVLGQCQLE SQILKLTEQL SEAQSEIRKL SERLEEMPTN SSSSSLSVEA NNAPTDFELA
201: PETNYNIPFY MLDNNYLQSM EYWDGLYV
101: IAGELGLDPR QVAVWFQNRR ARWKNKKLEE EYAKLKNHHD NVVLGQCQLE SQILKLTEQL SEAQSEIRKL SERLEEMPTN SSSSSLSVEA NNAPTDFELA
201: PETNYNIPFY MLDNNYLQSM EYWDGLYV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.