Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400045855 | Potato | nucleus | 87.05 | 91.55 |
| Solyc03g034110.2.1 | Tomato | nucleus | 80.8 | 84.98 |
| Solyc03g034120.2.1 | Tomato | nucleus | 74.55 | 81.07 |
| Solyc02g085630.2.1 | Tomato | nucleus | 55.8 | 58.96 |
| Solyc02g062960.2.1 | Tomato | nucleus | 51.79 | 56.59 |
| VIT_04s0023g01330.t01 | Wine grape | nucleus | 50.45 | 53.55 |
| KRH28621 | Soybean | nucleus | 50.45 | 52.56 |
| Solyc03g034150.1.1 | Tomato | nucleus | 46.88 | 51.98 |
| KRH76853 | Soybean | nucleus | 49.55 | 51.87 |
| CDX69241 | Canola | nucleus | 46.88 | 48.39 |
| CDX75593 | Canola | nucleus | 46.88 | 48.39 |
| AT4G36740.2 | Thale cress | nucleus | 45.98 | 47.47 |
| CDX72601 | Canola | nucleus | 45.98 | 47.47 |
| Bra017780.1-P | Field mustard | nucleus | 45.54 | 47.0 |
| CDY67008 | Canola | nucleus | 34.38 | 46.67 |
| AT2G18550.1 | Thale cress | nucleus | 45.54 | 46.36 |
| KRH69950 | Soybean | nucleus | 43.3 | 45.75 |
| CDY30312 | Canola | nucleus | 45.54 | 45.74 |
| CDY68376 | Canola | nucleus | 45.09 | 45.5 |
| Bra040941.1-P | Field mustard | nucleus | 45.09 | 45.5 |
| CDY24769 | Canola | nucleus | 44.64 | 45.45 |
| CDY35477 | Canola | nucleus | 43.3 | 44.09 |
| GSMUA_Achr7P25990_001 | Banana | nucleus | 29.91 | 44.08 |
| Bra028099.1-P | Field mustard | nucleus | 42.86 | 43.64 |
| AT5G66700.1 | Thale cress | nucleus | 44.2 | 43.42 |
| CDX81374 | Canola | nucleus | 43.3 | 43.3 |
| CDY57132 | Canola | nucleus | 43.3 | 43.11 |
| CDY30761 | Canola | nucleus | 42.41 | 42.41 |
| Bra037154.1-P | Field mustard | nucleus | 42.41 | 42.22 |
| CDY52162 | Canola | nucleus | 43.3 | 41.99 |
| Bra031819.1-P | Field mustard | nucleus | 43.3 | 41.99 |
| Bra012093.1-P | Field mustard | nucleus | 41.96 | 41.96 |
| CDY70377 | Canola | nucleus | 41.96 | 41.96 |
| GSMUA_Achr1P22640_001 | Banana | nucleus | 33.48 | 41.21 |
| Bra010573.1-P | Field mustard | nucleus | 32.59 | 40.33 |
| GSMUA_Achr8P31170_001 | Banana | nucleus | 36.61 | 39.23 |
| HORVU2Hr1G036680.2 | Barley | nucleus | 37.95 | 36.02 |
| Os07t0581700-01 | Rice | nucleus | 37.95 | 35.42 |
| GSMUA_Achr4P07170_001 | Banana | nucleus | 31.7 | 35.32 |
| TraesCS2B01G405700.1 | Wheat | nucleus | 34.82 | 35.29 |
| EER97443 | Sorghum | nucleus | 36.16 | 35.06 |
| HORVU2Hr1G092300.1 | Barley | nucleus | 20.98 | 34.81 |
| TraesCS2A01G188500.1 | Wheat | nucleus | 36.61 | 34.45 |
| Zm00001d021934_P001 | Maize | nucleus | 35.71 | 34.19 |
| TraesCS2B01G218800.1 | Wheat | nucleus | 36.16 | 34.03 |
| TraesCS2D01G199200.1 | Wheat | nucleus | 36.16 | 34.03 |
| Zm00001d006687_P001 | Maize | nucleus | 33.48 | 33.78 |
| TraesCS2D01G385500.1 | Wheat | nucleus | 34.82 | 31.58 |
| TraesCSU01G009800.1 | Wheat | nucleus | 34.38 | 31.56 |
| Os03t0198600-01 | Rice | nucleus | 33.48 | 31.38 |
| Zm00001d048172_P001 | Maize | nucleus | 32.14 | 30.77 |
| HORVU2Hr1G092290.6 | Barley | nucleus | 31.7 | 30.47 |
| Zm00001d028129_P002 | Maize | nucleus, plastid | 32.14 | 30.13 |
| EER92693 | Sorghum | nucleus | 32.14 | 29.75 |
| HORVU4Hr1G070610.1 | Barley | nucleus | 30.36 | 29.69 |
| TraesCS4B01G261600.1 | Wheat | nucleus | 30.36 | 29.18 |
| TraesCS4D01G261600.1 | Wheat | nucleus | 30.36 | 29.06 |
| TraesCS4A01G040600.1 | Wheat | nucleus | 29.91 | 29.0 |
| GSMUA_Achr4P14070_001 | Banana | plastid | 35.71 | 27.3 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | UniProt:K4BFT5 |
| PFAM:PF00046 | PRINTS:PR00031 | ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF281 |
| SMART:SM00389 | SUPFAM:SSF46689 | EnsemblPlantsGene:Solyc03g034130.2 | EnsemblPlants:Solyc03g034130.2.1 | UniParc:UPI0002767D84 | SEG:seg |
Description
No Description!
Coordinates
chr3:-:5825012..5826152
Molecular Weight (calculated)
26777.7 Da
IEP (calculated)
6.006
GRAVY (calculated)
-1.029
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKGLSMKGN KVDDQMELIS HFYPQIYSQL AQQQEETVKP RRRRRKNKDE GRDNTSEVLM RKRKLLSEEQ VNLLERSFGD QHKLETERKA KLASEVGLDP
101: HQVAVWFQNR RARWKNRKLE EEYSKLKTQH EDTIIEKCRL ETEVLKMKEQ LCEAKKEIER LLLEHKSDIS SNNSPTSSIF SMEQSHFNLG EFGMEEQLMD
201: DNMFFVADYQ SNYVTLWDNE LEWI
101: HQVAVWFQNR RARWKNRKLE EEYSKLKTQH EDTIIEKCRL ETEVLKMKEQ LCEAKKEIER LLLEHKSDIS SNNSPTSSIF SMEQSHFNLG EFGMEEQLMD
201: DNMFFVADYQ SNYVTLWDNE LEWI
001: MNYTVDDQNM AFISQLYPDV YTQIVQPVGE VKQPKRRRKK TKGSVASADG GNGLFRKRKL TDEQVNMLEM SFGDEHKLES ERKDRLAAEL GLDPRQVAVW
101: FQNRRARWKN KRLEEEYNKL KNSHDNVVVD KCRLESEVIQ LKEQLYDAER EIQRLAERVE GGSSNSPISS SVSVEANETP FFGDYKVGDD GDDYDHLFYP
201: VPENSYIDEA EWMSLYI
101: FQNRRARWKN KRLEEEYNKL KNSHDNVVVD KCRLESEVIQ LKEQLYDAER EIQRLAERVE GGSSNSPISS SVSVEANETP FFGDYKVGDD GDDYDHLFYP
201: VPENSYIDEA EWMSLYI
Arabidopsis Description
HB-5homeobox protein 40 [Source:TAIR;Acc:AT4G36740]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.