Factsheet for VIT_04s0023g01330.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g085630.2.1	Tomato	nucleus	61.14	60.85
PGSC0003DMT400011464	Potato	nucleus	60.19	60.77
Solyc02g062960.2.1	Tomato	nucleus	57.82	59.51
KRH28621	Soybean	nucleus	60.19	59.07
KRH76853	Soybean	nucleus	58.77	57.94
CDX75593	Canola	nucleus	58.77	57.14
CDX69241	Canola	nucleus	58.29	56.68
PGSC0003DMT400033036	Potato	nucleus	57.35	56.54
CDY30312	Canola	nucleus	58.77	55.61
Bra040941.1-P	Field mustard	nucleus	58.29	55.41
CDY68376	Canola	nucleus	57.82	54.95
AT4G36740.2	Thale cress	nucleus	55.92	54.38
CDX72601	Canola	nucleus	55.92	54.38
Solyc03g034120.2.1	Tomato	nucleus	52.13	53.4
PGSC0003DMT400045834	Potato	nucleus	53.08	53.08
Bra017780.1-P	Field mustard	nucleus	54.5	53.0
KRH69950	Soybean	nucleus	53.08	52.83
CDY35477	Canola	nucleus	54.98	52.73
Bra028099.1-P	Field mustard	nucleus	54.5	52.27
CDY67008	Canola	nucleus	40.28	51.52
CDY24769	Canola	nucleus	53.55	51.36
PGSC0003DMT400045855	Potato	nucleus	51.66	51.17
Solyc03g034110.2.1	Tomato	nucleus	51.66	51.17
Solyc03g034130.2.1	Tomato	nucleus	53.55	50.45
Bra010573.1-P	Field mustard	nucleus	42.18	49.17
PGSC0003DMT400050373	Potato	nucleus	38.39	49.09
AT2G18550.1	Thale cress	nucleus	51.18	49.09
GSMUA_Achr7P25990_001	Banana	nucleus	34.12	47.37
GSMUA_Achr1P22640_001	Banana	nucleus	40.76	47.25
PGSC0003DMT400045832	Potato	nucleus	50.71	46.12
Solyc03g034150.1.1	Tomato	nucleus	43.6	45.54
CDY70377	Canola	nucleus	47.39	44.64
Bra012093.1-P	Field mustard	nucleus	47.39	44.64
CDX81374	Canola	nucleus	46.92	44.2
AT5G66700.1	Thale cress	nucleus	47.39	43.86
CDY30761	Canola	nucleus	46.45	43.75
GSMUA_Achr8P31170_001	Banana	nucleus	43.13	43.54
Bra037154.1-P	Field mustard	nucleus	45.97	43.11
CDY57132	Canola	nucleus	45.97	43.11
Bra031819.1-P	Field mustard	nucleus	45.5	41.56
CDY52162	Canola	nucleus	45.5	41.56
GSMUA_Achr4P07170_001	Banana	nucleus	38.39	40.3
Os07t0581700-01	Rice	nucleus	45.5	40.0
HORVU2Hr1G036680.2	Barley	nucleus	43.6	38.98
EER97443	Sorghum	nucleus	42.65	38.96
Zm00001d021934_P001	Maize	nucleus	42.65	38.46
TraesCS2D01G199200.1	Wheat	nucleus	42.18	37.4
Zm00001d006687_P001	Maize	nucleus	38.86	36.94
TraesCS2B01G405700.1	Wheat	nucleus	38.39	36.65
TraesCS2A01G188500.1	Wheat	nucleus	41.23	36.55
HORVU2Hr1G092300.1	Barley	nucleus	23.22	36.3
TraesCS2B01G218800.1	Wheat	nucleus	40.76	36.13
Os03t0198600-01	Rice	nucleus	40.76	35.98
EER92693	Sorghum	nucleus	41.23	35.95
Zm00001d028129_P002	Maize	nucleus, plastid	40.28	35.56
Zm00001d048172_P001	Maize	nucleus	39.34	35.47
TraesCS4A01G040600.1	Wheat	nucleus	36.97	33.77
TraesCS2D01G385500.1	Wheat	nucleus	38.86	33.2
TraesCS4B01G261600.1	Wheat	nucleus	36.49	33.05
TraesCS4D01G261600.1	Wheat	nucleus	36.49	32.91
TraesCSU01G009800.1	Wheat	nucleus	37.91	32.79
HORVU4Hr1G070610.1	Barley	nucleus	35.55	32.75
HORVU2Hr1G092290.6	Barley	nucleus	33.18	30.04
GSMUA_Achr4P14070_001	Banana	plastid	41.23	29.69

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100253069	wikigene:100253069	MapMan:15.5.3.1	ProteinID:CBI17561	ProteinID:CBI17561.3
ncoils:Coil	UniProt:D7SPI2	EMBL:FN594959	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	EntrezGene:LOC100253069
wikigene:LOC100253069	PFAM:PF00046	PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326
PANTHER:PTHR24326:SF281	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI0001983190	ArrayExpress:VIT_04s0023g01330	EnsemblPlantsGene:VIT_04s0023g01330
EnsemblPlants:VIT_04s0023g01330.t01	unigene:Vvi.23029	RefSeq:XP_002273007	RefSeq:XP_002273007.1	SEG:seg	:

Description

No Description!

Coordinates

chr4:+:17798124..17799829

Molecular Weight (calculated)

24354.8 Da

IEP (calculated)

6.376

GRAVY (calculated)

-0.800

Length

211 amino acids

Sequence
(BLAST)

001: MTTAMNQQVQ DHMELFTHMY PGLYTQAMPE QGEAKVRRRR KKSKGESSSG CARKRKLSEE QVTHLELNFG NEHKLESERK DKIASELGLD PRQVAVWFQN
101: RRARWKSKKL EEEFSKLKIV HESVVVEKCR LETEVLTLKE QLSDAEKEIR RLSERSDGVS SNSPTSSLSN AVDVDPPFFG EFGVVDGLDN VFYIPENNYV
201: SGMEWGYLYD M

Best Arabidopsis Sequence Match ( AT4G36740.2 )
(BLAST)

001: MNYTVDDQNM AFISQLYPDV YTQIVQPVGE VKQPKRRRKK TKGSVASADG GNGLFRKRKL TDEQVNMLEM SFGDEHKLES ERKDRLAAEL GLDPRQVAVW
101: FQNRRARWKN KRLEEEYNKL KNSHDNVVVD KCRLESEVIQ LKEQLYDAER EIQRLAERVE GGSSNSPISS SVSVEANETP FFGDYKVGDD GDDYDHLFYP
201: VPENSYIDEA EWMSLYI

Arabidopsis Description

HB-5homeobox protein 40 [Source:TAIR;Acc:AT4G36740]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.