Factsheet for PGSC0003DMT400045834

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400045855	Potato	nucleus	81.52	80.75
PGSC0003DMT400045832	Potato	nucleus	73.93	67.24
PGSC0003DMT400011464	Potato	nucleus	56.4	56.94
PGSC0003DMT400050373	Potato	nucleus	43.6	55.76
PGSC0003DMT400033036	Potato	nucleus	55.45	54.67
VIT_04s0023g01330.t01	Wine grape	nucleus	53.08	53.08
KRH28621	Soybean	nucleus	52.61	51.63
KRH76853	Soybean	nucleus	51.66	50.93
AT4G36740.2	Thale cress	nucleus	52.13	50.69
CDX69241	Canola	nucleus	51.18	49.77
CDX72601	Canola	nucleus	51.18	49.77
CDX75593	Canola	nucleus	50.71	49.31
Bra017780.1-P	Field mustard	nucleus	49.76	48.39
Bra040941.1-P	Field mustard	nucleus	50.24	47.75
AT2G18550.1	Thale cress	nucleus	49.76	47.73
CDY30312	Canola	nucleus	50.24	47.53
CDY68376	Canola	nucleus	49.76	47.3
CDY67008	Canola	nucleus	36.97	47.27
GSMUA_Achr7P25990_001	Banana	nucleus	33.65	46.71
CDY24769	Canola	nucleus	47.87	45.91
CDY35477	Canola	nucleus	46.92	45.0
Bra028099.1-P	Field mustard	nucleus	45.97	44.09
KRH69950	Soybean	nucleus	44.08	43.87
CDY57132	Canola	nucleus	46.45	43.56
GSMUA_Achr1P22640_001	Banana	nucleus	37.44	43.41
AT5G66700.1	Thale cress	nucleus	46.45	42.98
CDY30761	Canola	nucleus	45.5	42.86
CDX81374	Canola	nucleus	45.5	42.86
Bra012093.1-P	Field mustard	nucleus	45.02	42.41
CDY70377	Canola	nucleus	45.02	42.41
Bra037154.1-P	Field mustard	nucleus	45.02	42.22
Bra010573.1-P	Field mustard	nucleus	35.55	41.44
Bra031819.1-P	Field mustard	nucleus	45.02	41.13
CDY52162	Canola	nucleus	45.02	41.13
GSMUA_Achr8P31170_001	Banana	nucleus	38.39	38.76
GSMUA_Achr4P07170_001	Banana	nucleus	36.02	37.81
TraesCS2B01G405700.1	Wheat	nucleus	38.86	37.1
HORVU2Hr1G036680.2	Barley	nucleus	40.28	36.02
Os07t0581700-01	Rice	nucleus	40.28	35.42
HORVU2Hr1G092300.1	Barley	nucleus	22.27	34.81
TraesCS2A01G188500.1	Wheat	nucleus	38.86	34.45
TraesCS2B01G218800.1	Wheat	nucleus	38.86	34.45
TraesCS2D01G199200.1	Wheat	nucleus	38.86	34.45
EER97443	Sorghum	nucleus	37.44	34.2
Zm00001d021934_P001	Maize	nucleus	37.91	34.19
Zm00001d006687_P001	Maize	nucleus	35.55	33.78
Os03t0198600-01	Rice	nucleus	36.49	32.22
TraesCS2D01G385500.1	Wheat	nucleus	37.44	31.98
TraesCSU01G009800.1	Wheat	nucleus	36.97	31.97
Zm00001d048172_P001	Maize	nucleus	35.07	31.62
TraesCS4D01G261600.1	Wheat	nucleus	34.6	31.2
HORVU4Hr1G070610.1	Barley	nucleus	33.65	31.0
TraesCS4A01G040600.1	Wheat	nucleus	33.65	30.74
EER92693	Sorghum	nucleus	35.07	30.58
Zm00001d028129_P002	Maize	nucleus, plastid	34.6	30.54
TraesCS4B01G261600.1	Wheat	nucleus	33.65	30.47
HORVU2Hr1G092290.6	Barley	nucleus	31.75	28.76
GSMUA_Achr4P14070_001	Banana	plastid	39.81	28.67

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102604054	MapMan:15.5.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356
UniProt:M1BI98	PFAM:PF00046	EnsemblPlantsGene:PGSC0003DMG400017776	PGSC:PGSC0003DMG400017776	EnsemblPlants:PGSC0003DMT400045834	PRINTS:PR00031
ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF281	SMART:SM00389	SUPFAM:SSF46689
UniParc:UPI000296CF63	RefSeq:XP_006366983.1	SEG:seg	:	:	:

Description

Homeobox protein [Source:PGSC_GENE;Acc:PGSC0003DMG400017776]

Coordinates

chr3:-:4468682..4469989

Molecular Weight (calculated)

25066.0 Da

IEP (calculated)

6.531

GRAVY (calculated)

-0.873

Length

211 amino acids

Sequence
(BLAST)

001: MSSSKVDDQM ELISHFYPHI YAQLAQEQVS LGEKMEPRRR RKKKKSEGEV VMRKRKLLSE EQVNLLERSF GDEHKLEMER KAKLASELGL DPHQVAVWFQ
101: NRRARWKNKK IEEEYSKLKT QHETTIIEKY RLETEVLKMK EQLCEAEMEI QKLLLERKSD ISSNNSPISS IFSMEQQHFD LGEFGMEGKL MDDNMFFVAD
201: NQSTYITLWD N

Best Arabidopsis Sequence Match ( AT2G18550.1 )
(BLAST)

001: MNNQNVDDHN LLLISQLYPN VYTPLVPQQG GEAKPTRRRK RKSKSVVVAE EGENEGNGWF RKRKLSDEQV RMLEISFEDD HKLESERKDR LASELGLDPR
101: QVAVWFQNRR ARWKNKRVED EYTKLKNAYE TTVVEKCRLD SEVIHLKEQL YEAEREIQRL AKRVEGTLSN SPISSSVTIE ANHTTPFFGD YDIGFDGEAD
201: ENLLYSPDYI DGLDWMSQFM

Arabidopsis Description

ATHB-21Homeobox-leucine zipper protein ATHB-21 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU70]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.