Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017780.1-P | Field mustard | nucleus | 95.85 | 95.85 |
| CDX75593 | Canola | nucleus | 83.41 | 83.41 |
| CDX69241 | Canola | nucleus | 82.95 | 82.95 |
| AT4G36740.2 | Thale cress | nucleus | 80.18 | 80.18 |
| CDY35477 | Canola | nucleus | 76.96 | 75.91 |
| CDY24769 | Canola | nucleus | 76.04 | 75.0 |
| CDY30312 | Canola | nucleus | 71.43 | 69.51 |
| CDY68376 | Canola | nucleus | 70.51 | 68.92 |
| Solyc02g085630.2.1 | Tomato | nucleus | 57.14 | 58.49 |
| PGSC0003DMT400011464 | Potato | nucleus | 55.76 | 57.89 |
| PGSC0003DMT400033036 | Potato | nucleus | 56.22 | 57.01 |
| KRH76853 | Soybean | nucleus | 55.76 | 56.54 |
| Solyc02g062960.2.1 | Tomato | nucleus | 53.0 | 56.1 |
| VIT_04s0023g01330.t01 | Wine grape | nucleus | 54.38 | 55.92 |
| KRH28621 | Soybean | nucleus | 53.46 | 53.95 |
| CDY67008 | Canola | nucleus | 39.63 | 52.12 |
| Solyc03g034120.2.1 | Tomato | nucleus | 48.85 | 51.46 |
| PGSC0003DMT400045834 | Potato | nucleus | 49.77 | 51.18 |
| PGSC0003DMT400050373 | Potato | nucleus | 37.33 | 49.09 |
| KRH69950 | Soybean | nucleus | 47.0 | 48.11 |
| Solyc03g034150.1.1 | Tomato | nucleus | 43.78 | 47.03 |
| Solyc03g034110.2.1 | Tomato | nucleus | 46.08 | 46.95 |
| PGSC0003DMT400045855 | Potato | nucleus | 46.08 | 46.95 |
| CDY70377 | Canola | nucleus | 47.93 | 46.43 |
| GSMUA_Achr7P25990_001 | Banana | nucleus | 32.26 | 46.05 |
| Solyc03g034130.2.1 | Tomato | nucleus | 47.47 | 45.98 |
| GSMUA_Achr1P22640_001 | Banana | nucleus | 38.25 | 45.6 |
| CDX81374 | Canola | nucleus | 46.08 | 44.64 |
| CDY30761 | Canola | nucleus | 46.08 | 44.64 |
| CDY57132 | Canola | nucleus | 45.62 | 44.0 |
| PGSC0003DMT400045832 | Potato | nucleus | 47.0 | 43.97 |
| CDY52162 | Canola | nucleus | 45.62 | 42.86 |
| HORVU2Hr1G092300.1 | Barley | nucleus | 24.88 | 40.0 |
| GSMUA_Achr8P31170_001 | Banana | nucleus | 38.25 | 39.71 |
| GSMUA_Achr4P07170_001 | Banana | nucleus | 36.41 | 39.3 |
| EER97443 | Sorghum | nucleus | 39.63 | 37.23 |
| Os07t0581700-01 | Rice | nucleus | 40.55 | 36.67 |
| Zm00001d006687_P001 | Maize | nucleus | 37.33 | 36.49 |
| Zm00001d021934_P001 | Maize | nucleus | 38.71 | 35.9 |
| TraesCS2B01G405700.1 | Wheat | nucleus | 36.41 | 35.75 |
| HORVU2Hr1G036680.2 | Barley | nucleus | 37.79 | 34.75 |
| Os03t0198600-01 | Rice | nucleus | 38.25 | 34.73 |
| TraesCS2A01G188500.1 | Wheat | nucleus | 37.79 | 34.45 |
| TraesCS2D01G199200.1 | Wheat | nucleus | 36.87 | 33.61 |
| TraesCS2B01G218800.1 | Wheat | nucleus | 36.41 | 33.19 |
| HORVU4Hr1G070610.1 | Barley | nucleus | 35.02 | 33.19 |
| TraesCS4B01G261600.1 | Wheat | nucleus | 35.48 | 33.05 |
| TraesCS4D01G261600.1 | Wheat | nucleus | 35.48 | 32.91 |
| TraesCS4A01G040600.1 | Wheat | nucleus | 35.02 | 32.9 |
| EER92693 | Sorghum | nucleus | 35.94 | 32.23 |
| Zm00001d028129_P002 | Maize | nucleus, plastid | 35.48 | 32.22 |
| TraesCS2D01G385500.1 | Wheat | nucleus | 36.41 | 31.98 |
| TraesCSU01G009800.1 | Wheat | nucleus | 35.94 | 31.97 |
| Zm00001d048172_P001 | Maize | nucleus | 33.64 | 31.2 |
| HORVU2Hr1G092290.6 | Barley | nucleus | 33.18 | 30.9 |
| GSMUA_Achr4P14070_001 | Banana | plastid | 39.17 | 29.01 |
| CDY16214 | Canola | nucleus | 24.88 | 23.58 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | GO:A0A078C6D0 | EnsemblPlants:CDX72601 | ProteinID:CDX72601 | ProteinID:CDX72601.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00100145001 | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 |
| PFAM:PF00046 | PRINTS:PR00031 | ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF281 |
| SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI0004EB1655 | SEG:seg | : | : |
Description
BnaC07g46230D
Coordinates
chrLK031796:-:2117976..2119471
Molecular Weight (calculated)
25229.4 Da
IEP (calculated)
4.959
GRAVY (calculated)
-0.925
Length
217 amino acids
Sequence
(BLAST)
(BLAST)
001: MNHTMDDDQN LAFISQLYPD VYTQILPQEG AVKPPKRRRK KSKRAVATGD GSNCFFRKRK LSDEQVNMLE MSFGDEHKLE SERKDKLAAE LGLDPRQVAV
101: WFQNRRARWK NKRLEEEYNN LKNSHENVVA DKCRLESELL QLKEQLYDAE REIQRLAERV ERGASNSPIS SSVSVEANET PFFGDYNVGD DGDDYNLFYP
201: VPENTYIDGV EWANIYI
101: WFQNRRARWK NKRLEEEYNN LKNSHENVVA DKCRLESELL QLKEQLYDAE REIQRLAERV ERGASNSPIS SSVSVEANET PFFGDYNVGD DGDDYNLFYP
201: VPENTYIDGV EWANIYI
001: MNYTVDDQNM AFISQLYPDV YTQIVQPVGE VKQPKRRRKK TKGSVASADG GNGLFRKRKL TDEQVNMLEM SFGDEHKLES ERKDRLAAEL GLDPRQVAVW
101: FQNRRARWKN KRLEEEYNKL KNSHDNVVVD KCRLESEVIQ LKEQLYDAER EIQRLAERVE GGSSNSPISS SVSVEANETP FFGDYKVGDD GDDYDHLFYP
201: VPENSYIDEA EWMSLYI
101: FQNRRARWKN KRLEEEYNKL KNSHDNVVVD KCRLESEVIQ LKEQLYDAER EIQRLAERVE GGSSNSPISS SVSVEANETP FFGDYKVGDD GDDYDHLFYP
201: VPENSYIDEA EWMSLYI
Arabidopsis Description
HB-5homeobox protein 40 [Source:TAIR;Acc:AT4G36740]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.