Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX69241 | Canola | nucleus | 86.18 | 86.18 |
| CDX75593 | Canola | nucleus | 84.33 | 84.33 |
| CDX72601 | Canola | nucleus | 80.18 | 80.18 |
| Bra017780.1-P | Field mustard | nucleus | 79.72 | 79.72 |
| CDY35477 | Canola | nucleus | 77.42 | 76.36 |
| CDY24769 | Canola | nucleus | 72.81 | 71.82 |
| Bra010573.1-P | Field mustard | nucleus | 59.45 | 71.27 |
| AT2G18550.1 | Thale cress | nucleus | 63.59 | 62.73 |
| Solyc02g085630.2.1 | Tomato | nucleus | 58.53 | 59.91 |
| Solyc02g062960.2.1 | Tomato | nucleus | 54.84 | 58.05 |
| PGSC0003DMT400033036 | Potato | nucleus | 55.3 | 56.07 |
| VIT_04s0023g01330.t01 | Wine grape | nucleus | 54.38 | 55.92 |
| PGSC0003DMT400011464 | Potato | nucleus | 53.46 | 55.5 |
| KRH28621 | Soybean | nucleus | 53.92 | 54.42 |
| KRH76853 | Soybean | nucleus | 53.46 | 54.21 |
| PGSC0003DMT400045834 | Potato | nucleus | 50.69 | 52.13 |
| Solyc03g034120.2.1 | Tomato | nucleus | 47.93 | 50.49 |
| PGSC0003DMT400045855 | Potato | nucleus | 46.54 | 47.42 |
| AT5G66700.1 | Thale cress | nucleus | 49.77 | 47.37 |
| GSMUA_Achr7P25990_001 | Banana | nucleus | 33.18 | 47.37 |
| PGSC0003DMT400050373 | Potato | nucleus | 35.94 | 47.27 |
| GSMUA_Achr1P22640_001 | Banana | nucleus | 39.63 | 47.25 |
| Solyc03g034110.2.1 | Tomato | nucleus | 45.16 | 46.01 |
| Solyc03g034130.2.1 | Tomato | nucleus | 47.47 | 45.98 |
| Solyc03g034150.1.1 | Tomato | nucleus | 41.94 | 45.05 |
| KRH69950 | Soybean | nucleus | 43.78 | 44.81 |
| PGSC0003DMT400045832 | Potato | nucleus | 45.62 | 42.67 |
| Zm00001d021934_P001 | Maize | nucleus | 43.32 | 40.17 |
| EER97443 | Sorghum | nucleus | 42.4 | 39.83 |
| GSMUA_Achr4P07170_001 | Banana | nucleus | 36.87 | 39.8 |
| GSMUA_Achr8P31170_001 | Banana | nucleus | 38.25 | 39.71 |
| Os07t0581700-01 | Rice | nucleus | 42.86 | 38.75 |
| TraesCS2B01G405700.1 | Wheat | nucleus | 38.71 | 38.01 |
| Zm00001d006687_P001 | Maize | nucleus | 38.71 | 37.84 |
| HORVU2Hr1G092300.1 | Barley | nucleus | 23.5 | 37.78 |
| HORVU2Hr1G036680.2 | Barley | nucleus | 41.01 | 37.71 |
| TraesCS2D01G199200.1 | Wheat | nucleus | 40.55 | 36.97 |
| TraesCS2B01G218800.1 | Wheat | nucleus | 40.09 | 36.55 |
| TraesCS2A01G188500.1 | Wheat | nucleus | 39.63 | 36.13 |
| Os03t0198600-01 | Rice | nucleus | 39.17 | 35.56 |
| HORVU4Hr1G070610.1 | Barley | nucleus | 36.87 | 34.93 |
| TraesCS4A01G040600.1 | Wheat | nucleus | 36.41 | 34.2 |
| TraesCS2D01G385500.1 | Wheat | nucleus | 38.71 | 34.01 |
| TraesCS4B01G261600.1 | Wheat | nucleus | 36.41 | 33.91 |
| TraesCS4D01G261600.1 | Wheat | nucleus | 36.41 | 33.76 |
| TraesCSU01G009800.1 | Wheat | nucleus | 37.79 | 33.61 |
| HORVU2Hr1G092290.6 | Barley | nucleus | 34.56 | 32.19 |
| EER92693 | Sorghum | nucleus | 35.48 | 31.82 |
| Zm00001d028129_P002 | Maize | nucleus, plastid | 35.02 | 31.8 |
| Zm00001d048172_P001 | Maize | nucleus | 34.1 | 31.62 |
| GSMUA_Achr4P14070_001 | Banana | plastid | 39.63 | 29.35 |
| AT1G27045.4 | Thale cress | nucleus | 31.34 | 26.98 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | EntrezGene:829827 | UniProt:A0A1P8B6F4 | ProteinID:ANM67166.1 | ArrayExpress:AT4G36740 |
| EnsemblPlantsGene:AT4G36740 | RefSeq:AT4G36740 | TAIR:AT4G36740 | RefSeq:AT4G36740-TAIR-G | EnsemblPlants:AT4G36740.2 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | Symbol:HB-5 | InterPro:HTH_motif | InterPro:Homeobox-like_sf |
| InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | RefSeq:NP_001329011.1 | PFAM:PF00046 | PRINTS:PR00031 |
| ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF281 | SMART:SM00389 | SUPFAM:SSF46689 |
| UniParc:UPI00000AA323 | SEG:seg | : | : | : | : |
Description
HB-5homeobox protein 40 [Source:TAIR;Acc:AT4G36740]
Coordinates
chr4:-:17314559..17316374
Molecular Weight (calculated)
25180.4 Da
IEP (calculated)
4.862
GRAVY (calculated)
-0.898
Length
217 amino acids
Sequence
(BLAST)
(BLAST)
001: MNYTVDDQNM AFISQLYPDV YTQIVQPVGE VKQPKRRRKK TKGSVASADG GNGLFRKRKL TDEQVNMLEM SFGDEHKLES ERKDRLAAEL GLDPRQVAVW
101: FQNRRARWKN KRLEEEYNKL KNSHDNVVVD KCRLESEVIQ LKEQLYDAER EIQRLAERVE GGSSNSPISS SVSVEANETP FFGDYKVGDD GDDYDHLFYP
201: VPENSYIDEA EWMSLYI
101: FQNRRARWKN KRLEEEYNKL KNSHDNVVVD KCRLESEVIQ LKEQLYDAER EIQRLAERVE GGSSNSPISS SVSVEANETP FFGDYKVGDD GDDYDHLFYP
201: VPENSYIDEA EWMSLYI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.