Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010573.1-P | Field mustard | nucleus | 76.82 | 93.37 |
| CDY35477 | Canola | nucleus | 92.27 | 92.27 |
| CDX75593 | Canola | nucleus | 80.45 | 81.57 |
| CDX69241 | Canola | nucleus | 75.45 | 76.5 |
| CDX72601 | Canola | nucleus | 75.0 | 76.04 |
| AT4G36740.2 | Thale cress | nucleus | 71.82 | 72.81 |
| CDY30312 | Canola | nucleus | 64.09 | 63.23 |
| CDY68376 | Canola | nucleus | 62.73 | 62.16 |
| Solyc02g085630.2.1 | Tomato | nucleus | 56.82 | 58.96 |
| PGSC0003DMT400033036 | Potato | nucleus | 53.18 | 54.67 |
| PGSC0003DMT400011464 | Potato | nucleus | 51.82 | 54.55 |
| Solyc02g062960.2.1 | Tomato | nucleus | 50.45 | 54.15 |
| VIT_04s0023g01330.t01 | Wine grape | nucleus | 51.36 | 53.55 |
| KRH76853 | Soybean | nucleus | 51.36 | 52.8 |
| CDY67008 | Canola | nucleus | 38.18 | 50.91 |
| Solyc03g034120.2.1 | Tomato | nucleus | 47.27 | 50.49 |
| KRH28621 | Soybean | nucleus | 49.09 | 50.23 |
| PGSC0003DMT400045834 | Potato | nucleus | 45.91 | 47.87 |
| GSMUA_Achr7P25990_001 | Banana | nucleus | 32.73 | 47.37 |
| PGSC0003DMT400050373 | Potato | nucleus | 35.45 | 47.27 |
| KRH69950 | Soybean | nucleus | 45.45 | 47.17 |
| PGSC0003DMT400045855 | Potato | nucleus | 44.55 | 46.01 |
| GSMUA_Achr1P22640_001 | Banana | nucleus | 37.73 | 45.6 |
| Solyc03g034110.2.1 | Tomato | nucleus | 43.64 | 45.07 |
| Solyc03g034130.2.1 | Tomato | nucleus | 45.45 | 44.64 |
| Solyc03g034150.1.1 | Tomato | nucleus | 40.45 | 44.06 |
| CDY70377 | Canola | nucleus | 44.09 | 43.3 |
| CDY57132 | Canola | nucleus | 44.09 | 43.11 |
| CDY30761 | Canola | nucleus | 43.64 | 42.86 |
| PGSC0003DMT400045832 | Potato | nucleus | 44.55 | 42.24 |
| CDX81374 | Canola | nucleus | 42.73 | 41.96 |
| CDY52162 | Canola | nucleus | 43.64 | 41.56 |
| GSMUA_Achr4P07170_001 | Banana | nucleus | 36.36 | 39.8 |
| TraesCS2B01G405700.1 | Wheat | nucleus | 39.09 | 38.91 |
| GSMUA_Achr8P31170_001 | Banana | nucleus | 35.91 | 37.8 |
| HORVU2Hr1G092300.1 | Barley | nucleus | 23.18 | 37.78 |
| HORVU2Hr1G036680.2 | Barley | nucleus | 38.64 | 36.02 |
| EER97443 | Sorghum | nucleus | 37.73 | 35.93 |
| Os07t0581700-01 | Rice | nucleus | 39.09 | 35.83 |
| TraesCS2D01G199200.1 | Wheat | nucleus | 38.64 | 35.71 |
| Zm00001d021934_P001 | Maize | nucleus | 37.73 | 35.47 |
| TraesCS2B01G218800.1 | Wheat | nucleus | 38.18 | 35.29 |
| Zm00001d006687_P001 | Maize | nucleus | 35.45 | 35.14 |
| TraesCS4D01G261600.1 | Wheat | nucleus | 37.27 | 35.04 |
| HORVU4Hr1G070610.1 | Barley | nucleus | 36.36 | 34.93 |
| TraesCS2D01G385500.1 | Wheat | nucleus | 39.09 | 34.82 |
| TraesCS4B01G261600.1 | Wheat | nucleus | 36.82 | 34.76 |
| Os03t0198600-01 | Rice | nucleus | 37.73 | 34.73 |
| TraesCS4A01G040600.1 | Wheat | nucleus | 36.36 | 34.63 |
| TraesCS2A01G188500.1 | Wheat | nucleus | 37.27 | 34.45 |
| TraesCSU01G009800.1 | Wheat | nucleus | 38.18 | 34.43 |
| EER92693 | Sorghum | nucleus | 35.91 | 32.64 |
| Zm00001d028129_P002 | Maize | nucleus, plastid | 34.55 | 31.8 |
| Zm00001d048172_P001 | Maize | nucleus | 33.18 | 31.2 |
| HORVU2Hr1G092290.6 | Barley | nucleus | 32.27 | 30.47 |
| GSMUA_Achr4P14070_001 | Banana | plastid | 39.09 | 29.35 |
| CDY16214 | Canola | nucleus | 26.36 | 25.33 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | GO:A0A078GHI5 | UniProt:A0A078GHI5 | EnsemblPlants:CDY24769 | ProteinID:CDY24769 |
| ProteinID:CDY24769.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | EnsemblPlantsGene:GSBRNA2T00027215001 |
| InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | PFAM:PF00046 |
| PRINTS:PR00031 | ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF281 | SMART:SM00389 |
| SUPFAM:SSF46689 | UniParc:UPI0004EE4C16 | SEG:seg | : | : | : |
Description
BnaA08g15410DBnaA08g15410D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GHI5]
Coordinates
chrLK032164:+:47872..49059
Molecular Weight (calculated)
25629.0 Da
IEP (calculated)
5.096
GRAVY (calculated)
-0.896
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MNPTVSDHNM AFISQLYPDV YTHIVPQGEV KPPKRRRKKS KRAVAAGDGS NCLFKKRKLT DEQMNMLEMS FCDEHKLESE RKDKLAAELG LDPRQVAVWF
101: QNRRARWKNK RLEEEYNQLK SSHDNVVVDK CRLESEVLQL KEQLFDAERE IQRLAERVEG GSGNSPVSSS VSIEHNETSF FGDYKVEEDG DDYDNMVYPV
201: PENSYMDGEE WINYQLNVIF
101: QNRRARWKNK RLEEEYNQLK SSHDNVVVDK CRLESEVLQL KEQLFDAERE IQRLAERVEG GSGNSPVSSS VSIEHNETSF FGDYKVEEDG DDYDNMVYPV
201: PENSYMDGEE WINYQLNVIF
001: MNYTVDDQNM AFISQLYPDV YTQIVQPGEV KQPKRRRKKT KGSVASADGG NGLFRKRKLT DEQVNMLEMS FGDEHKLESE RKDRLAAELG LDPRQVAVWF
101: QNRRARWKNK RLEEEYNKLK NSHDNVVVDK CRLESEVIQL KEQLYDAERE IQRLAERVEG GSSNSPISSS VSVEANETPF FGDYKVGDDG DDYDHLFYPV
201: PENSYIDEAE WMSLYI
101: QNRRARWKNK RLEEEYNKLK NSHDNVVVDK CRLESEVIQL KEQLYDAERE IQRLAERVEG GSSNSPISSS VSVEANETPF FGDYKVGDDG DDYDHLFYPV
201: PENSYIDEAE WMSLYI
Arabidopsis Description
HB-5homeobox protein 40 [Source:TAIR;Acc:AT4G36740]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.