Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G261600.1 | Wheat | nucleus | 95.24 | 94.42 |
| HORVU4Hr1G070610.1 | Barley | nucleus | 90.04 | 90.83 |
| TraesCS4D01G261600.1 | Wheat | nucleus | 86.58 | 85.47 |
| Os03t0198600-01 | Rice | nucleus | 64.5 | 62.34 |
| EER92693 | Sorghum | nucleus | 64.5 | 61.57 |
| Zm00001d028129_P002 | Maize | nucleus, plastid | 62.34 | 60.25 |
| Zm00001d048172_P001 | Maize | nucleus | 55.84 | 55.13 |
| GSMUA_Achr7P25990_001 | Banana | nucleus | 30.74 | 46.71 |
| GSMUA_Achr1P22640_001 | Banana | nucleus | 35.93 | 45.6 |
| GSMUA_Achr4P07170_001 | Banana | nucleus | 37.66 | 43.28 |
| CDY67008 | Canola | nucleus | 29.87 | 41.82 |
| TraesCS2A01G188500.1 | Wheat | nucleus | 42.86 | 41.6 |
| KRH76853 | Soybean | nucleus | 35.93 | 38.78 |
| GSMUA_Achr8P31170_001 | Banana | nucleus | 35.06 | 38.76 |
| KRH28621 | Soybean | nucleus | 35.06 | 37.67 |
| VIT_04s0023g01330.t01 | Wine grape | nucleus | 33.77 | 36.97 |
| AT4G36740.2 | Thale cress | nucleus | 34.2 | 36.41 |
| CDY24769 | Canola | nucleus | 34.63 | 36.36 |
| Solyc02g062960.2.1 | Tomato | nucleus | 32.03 | 36.1 |
| PGSC0003DMT400033036 | Potato | nucleus | 33.33 | 35.98 |
| CDX75593 | Canola | nucleus | 33.77 | 35.94 |
| CDX69241 | Canola | nucleus | 33.77 | 35.94 |
| Solyc02g085630.2.1 | Tomato | nucleus | 32.9 | 35.85 |
| PGSC0003DMT400050373 | Potato | nucleus | 25.54 | 35.76 |
| Bra040941.1-P | Field mustard | nucleus | 34.2 | 35.59 |
| CDY35477 | Canola | nucleus | 33.77 | 35.45 |
| CDY30312 | Canola | nucleus | 34.2 | 35.43 |
| KRH69950 | Soybean | nucleus | 32.47 | 35.38 |
| CDY68376 | Canola | nucleus | 33.77 | 35.14 |
| CDX72601 | Canola | nucleus | 32.9 | 35.02 |
| Bra028099.1-P | Field mustard | nucleus | 33.33 | 35.0 |
| PGSC0003DMT400011464 | Potato | nucleus | 31.6 | 34.93 |
| AT2G18550.1 | Thale cress | nucleus | 32.9 | 34.55 |
| Bra017780.1-P | Field mustard | nucleus | 32.03 | 34.1 |
| PGSC0003DMT400045834 | Potato | nucleus | 30.74 | 33.65 |
| GSMUA_Achr4P14070_001 | Banana | plastid | 41.99 | 33.11 |
| CDY30761 | Canola | nucleus | 32.03 | 33.04 |
| AT5G66700.1 | Thale cress | nucleus | 32.47 | 32.89 |
| CDY70377 | Canola | nucleus | 31.6 | 32.59 |
| Bra012093.1-P | Field mustard | nucleus | 31.6 | 32.59 |
| Solyc03g034120.2.1 | Tomato | nucleus | 29.0 | 32.52 |
| CDX81374 | Canola | nucleus | 30.74 | 31.7 |
| CDY52162 | Canola | nucleus | 31.6 | 31.6 |
| Bra031819.1-P | Field mustard | nucleus | 31.6 | 31.6 |
| PGSC0003DMT400045855 | Potato | nucleus | 29.0 | 31.46 |
| Solyc03g034110.2.1 | Tomato | nucleus | 28.57 | 30.99 |
| CDY57132 | Canola | nucleus | 29.87 | 30.67 |
| Bra010573.1-P | Field mustard | nucleus | 23.81 | 30.39 |
| Bra037154.1-P | Field mustard | nucleus | 29.44 | 30.22 |
| Solyc03g034130.2.1 | Tomato | nucleus | 29.0 | 29.91 |
| Solyc03g034150.1.1 | Tomato | nucleus | 25.97 | 29.7 |
| PGSC0003DMT400045832 | Potato | nucleus | 29.0 | 28.88 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom |
| InterPro:IPR001356 | PFAM:PF00046 | PRINTS:PR00031 | ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 |
| PANTHER:PTHR24326:SF262 | SMART:SM00389 | SUPFAM:SSF46689 | EnsemblPlantsGene:TraesCS4A01G040600 | EnsemblPlants:TraesCS4A01G040600.1 | TIGR:cd00086 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr4A:-:34026753..34027976
Molecular Weight (calculated)
25532.0 Da
IEP (calculated)
6.571
GRAVY (calculated)
-0.664
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSEEGERLL FPSFVFPDSF PADDATPVVS GGEQKKAGRQ RRRRRARQAA SGEGGGDDAA KKRRLSDEQA QFLEMNFRKE RKLETPRKVQ LAAELGLDTK
101: QVAVWFQNRR ARYKSKLIEE EFSKLRAAHD AVVVHNCRLE AELLRLKERL AETEEEKNKA MAASAAATGG GGGSSPSSSS FSTVTAMVGG QQFGMEEVET
201: DLTYMSEYAY TNYMMDLAAG GYLGGVYDQF S
101: QVAVWFQNRR ARYKSKLIEE EFSKLRAAHD AVVVHNCRLE AELLRLKERL AETEEEKNKA MAASAAATGG GGGSSPSSSS FSTVTAMVGG QQFGMEEVET
201: DLTYMSEYAY TNYMMDLAAG GYLGGVYDQF S
001: MNNQNVDDHN LLLISQLYPN VYTPLVPQQG GEAKPTRRRK RKSKSVVVAE EGENEGNGWF RKRKLSDEQV RMLEISFEDD HKLESERKDR LASELGLDPR
101: QVAVWFQNRR ARWKNKRVED EYTKLKNAYE TTVVEKCRLD SEVIHLKEQL YEAEREIQRL AKRVEGTLSN SPISSSVTIE ANHTTPFFGD YDIGFDGEAD
201: ENLLYSPDYI DGLDWMSQFM
101: QVAVWFQNRR ARWKNKRVED EYTKLKNAYE TTVVEKCRLD SEVIHLKEQL YEAEREIQRL AKRVEGTLSN SPISSSVTIE ANHTTPFFGD YDIGFDGEAD
201: ENLLYSPDYI DGLDWMSQFM
Arabidopsis Description
ATHB-21Homeobox-leucine zipper protein ATHB-21 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU70]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.